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Hi,
The sparsity threshold in Arrowhead requires a very high number of read pairs. At 5kb and 10kb bin size (Juicer Arrowhead defaults) this threshold is probably sensible because when it is not m…
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Hi, is there a script using which I make plot chromograms like in Fig1 of Dudchenko et al. 2017 to show a comparison from the old to improved assembly?
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Need to update all Juicebox versions including jars associated with all JNLPs we've distributed; need to make new local versions (BCM and Broad); need to make juicebox_32.
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Ideally, it should be easy for someone to simply update Juicebox rather than download it again. At the very least, we should have a way to notify users that a new version is available.
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- [ ] Have a call to switch to override Time of Use charge settings
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Hello ? I encountered a problem when I download Juicebox to linux systerm . After I uncompress the jar file ,I cannot find the command to use juciebox .
![image](https://user-images.githubuserconten…
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Hi , I ran 3d-dna for a plant genome with the command:
`sh 3d-dna/run-asm-pipeline.sh --mode haploid --input 10000 ./curated.fasta ./merged_nodups.txt`
I got error infomation as follows:
```
Wr…
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Randomization errors encountered: ___ no map found, ___ two different maps found
This statement should only be printed if the bin randomization flag is passed in, not by default.
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> wwwrun@jardell:/srv/www/htdocs/orcma> /srv/www/htdocs/orcma/public_html/vendor/bin/drush
PHP Warning: require(/srv/www/htdocs/orcma/public_html/vendor/bin/drush.php): failed to open stream: No suc…
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