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Note: Scope of this work is the `Napa` Database Instance. The same steps will need to be repeated in a prod-ready environment
For the "DeepShale" Study -
id: nmdc:sty-11-8fb6t785
legacy id: gol…
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Partial Biosample metadata:
```json
{
"id": "nmdc:bsm-11-znb2tv24",
"emsl_biosample_identifiers": [
"UUID:CPER-CB-T-b8027938-7ff4-46c1-8575-e23584f1e898"
]
}
```
Converting that…
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This comes up in NWB:
- TimeSeries requires at least one of `starting_time` and `rate`
- PlaneSegmentation requires at least one of `pixel_mask`, `image_mask`, `voxel_mask`
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It would be great if pytrie included a wheel in its pypi distribution - this would allow for use of packages that use pytrie in pyodide and PyScript.
See:
https://github.com/linkml/linkml/issues/1…
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I'm applying OntoGPT over a large (~100,000) set of documents. I have the extraction working fine, and have the output for each document saved to an individual file.
But I need to transform the YAM…
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Hi 👋
## Our case
We are using LinkML to describe our Gaia-X ontology to then generate Shacl shapes, Json-LD contexts, OWL files and others to come.
As many concepts already exist in other on…
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**Describe the bug**
Testing with [green](https://pypi.org/project/green/) fails
**To reproduce**
```
git clone https://github.com/linkml
cd linkml
pip install green
green
```
**Expected …
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In the context of https://github.com/mih/datalad-mihextras/issues/44, I have created a [basic LinkML model for a datalad dataset](https://github.com/jsheunis/datalad-sexy-snippets/blob/main/tools/meta…
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Note: Scope of this work is the `Napa` Database Instance. The same steps will need to be repeated in a prod-ready environment
For the "Populus" Study -
id: nmdc:sty-11-1t150432
legacy id: gold…
-
There are a number of very useful docgen jinja template customizations that have been made for the iSamples project, repo can be found here: https://github.com/isamplesorg/metadata
The goal of this…