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A hosts server
Centos7
Python3.12
sqlite 3.43
strongswan 5.9.11
```
uname -a
Linux iZ2zea13jdgtrkqnws5x3lZ 3.10.0-1160.99.1.el7.x86_64 #1 SMP Wed Sep 13 14:19:20 UTC 2023 x86_64 x86_64 x86_6…
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I need your help !
when i run it errors happened
funannotate util prot2genome -g test.softmasked.fa -p protein.evidence.fasta -o test
[Mar 13 02:12 PM]: Mapping 1,065 proteins to genome using…
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### Description of Issue/Question
salt-syndic process consumes more than 30GB memory with about 2000 minions connected and 500 minions reporting to port 4506:
```
root 44276 5.2 28.5 4238176…
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### Describe the bug
https://docs.sqlalchemy.org/en/14/dialects/mysql.html#ssl-connections
First example here shows how to using the [create_engine.connect_args](https://docs.sqlalchemy.org/en/1…
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2023/02/17 13:30:32 Successfully raised file descriptor limit to 10240
2023/02/17 13:30:32 read user rule file ok: 0
2023/02/17 13:30:32 Version: v2.0.318 beta
2023/02/17 13:30:32 LicenseName: En…
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When trying to make revision with Alembic it gives error like this:
```
Traceback (most recent call last):
…
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### Apache Airflow version
2.5.3
### What happened
config item `dags_are_paused_at_creation = False` in airflow.cfg file, then restart scheduler and webserver, but new dag task status is stil…
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### The problem
Step "Updating composer packages" fails within daily.sh:
```
Updating to latest codebase OK
Updating Composer packages FAIL
PHP De…
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### Apache Airflow version
2.5.3
### What happened
Upgrading from `2.4.3` to `2.5.3` caused a significant increase in dag processing time on standalone dag processor (~1-2s to 60s):
```
/…
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I got the following error when trying to run a `concatenate_and_load`:
```
File "/shared/sudlab1/utrons/utrons_env/lib/python3.8/site-packages/ruffus/task.py", line 712, in run_pooled_job_witho…