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Hi,
I have just mapped my reads against the latest GENCODE human transcriptome (version 42) with Salmon (`--gencode` option when indexing) but when I import my quant files with `tximeta` I got this e…
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Hello,
I was using Salmon 1.10 for quantifying some of my RNA-seq datasets, against a custom transcriptome. The transcriptome has 89109 transcripts, but the final quant.sf file has 88119. I am wond…
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Here I present a list of techniques, which I think should be covered by our proteomics tutorials. The list will be incomplete and so far not ordered after priorities. Any help and comments are appreci…
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##### System information (version)
- OpenCV => 4.0.0
- Operating System / Platform => ubuntu - docker image (jupyter/datascience-notebook:14fdfbf9cfc1)
- Compiler => gcc version 7.3.0 (Ubuntu…
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Hi @shirley-wu
Really Nice work!
I am trying to train on the given datasets, but I am getting the following logs and unable to complete the training. Can you please tell me what am I doing wron…
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大神们好。我在运行bloom_inference.py文件的时候,加载的模型是量化后的8bit模型(bloom7b-2m-8bit-128g.pt),但是加载的时候,transformer报错:
![image](https://user-images.githubusercontent.com/27938135/227882537-64c0cf67-aa2b-4d09-bf9e-9474f0b…
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Firstly, thanks for the great resource :)
We are trying to run this pipeline on 96 samples. Using command line
`nextflow run ./rna-seq/main.nf --readPathsFile ./data-manifest.tsv -profile docke…
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Dear FragPipe team,
I'm using FragPipe 18.0 to process some DDA data to generate spectral library, and found some peptides that are not in the digestion rule of stricttrypsin appeared in final libr…
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Hi
I was trying to read the multiQC json file but ran into the following error:
> df = TidyMultiqc::load_multiqc(multiQC_json)
Error: Can't recycle `general.salmon_version` (size 2) to match `gen…