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I'm running Galaxy 21.09, and executing this version of freebayes:
```
toolshed.g2.bx.psu.edu/repos/devteam/freebayes/freebayes/1.3.5+galaxy0
```
produces this error:
```
tool error
An error o…
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The latest version of this tool in the TS https://toolshed.g2.bx.psu.edu/view/bgruening/data_manager_diamond_database_builder/5558f74bd296 displays this on the View Repository page:
```
Invalid to…
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Suspect this is a validation issue of the config file
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**Describe the bug**
If I change the version of a tool used in a workflow and then download the workflow, the tool_id and content_id show the previous tool version. Only the changeset_revision is up…
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Installed in galaxyproject/usegalaxy-tools#451
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I would like to have access to the tool TETranscript on my UseGalaxy account
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A user informed be that in the [rna-seq-reads-to-counts](https://training.galaxyproject.org/training-material/topics/transcriptomics/tutorials/rna-seq-reads-to-counts/tutorial.html#create-count-matrix…
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Dear developers:
I want to use Jbrowse on galaxy, however it is not working.The error is as below:
Traceback (most recent call last):
File "/Users/songshuang/galaxy/database/shed_tools/toolshed.g…
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MTS: https://toolshed.g2.bx.psu.edu/view/iuc/circos/ef5f8bbf7730
Also tracked here. Looked like a dependency problem at first, but @erasche thinks it is a tool bug. cc @shiltemann https://github.co…