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DiSSCo
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SDR
Specimen Data Refinery
Apache License 2.0
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reference-file.csv file missing in the reporsitory
#135
mnhn-paul
opened
1 year ago
0
Create multi-specimen sheet herbarium dataset
#134
emhaston
opened
1 year ago
0
Evaluate and test the SDR deployment document
#133
llivermore
opened
1 year ago
21
Blog post(s): SDR and workflows
#132
llivermore
opened
1 year ago
0
Added ansible scripts
#131
OliverWoolland
closed
1 year ago
0
Docs
#130
OliverWoolland
closed
1 year ago
0
Write Explanation: Detail SDR deployment approach to SSL certificates
#129
OliverWoolland
closed
1 year ago
1
Write Reference: Collection of tools in WorkflowHub
#128
llivermore
opened
1 year ago
2
Write Explanation: SDR tools and workflows (inside of Galaxy, including tags)
#127
llivermore
opened
1 year ago
0
Write Explanation: SDR workflows (outside of Galaxy)
#126
llivermore
opened
1 year ago
0
Write Explanation: Update and beautify Galaxy landing page
#125
llivermore
closed
1 year ago
1
Write Explanation: General overview of the SDR for repo readme
#124
llivermore
opened
1 year ago
1
Write How-To: How to call Galaxy workflow using API
#123
OliverWoolland
opened
1 year ago
1
Write Reference: Populating variables of Ansible deployment
#122
llivermore
closed
1 year ago
1
Write Reference: Implementation details of individual custom SDR tools
#121
llivermore
closed
1 year ago
1
Write Explanation: Ansible scripts and SDR-ification
#120
llivermore
opened
1 year ago
0
Write Explanation: Description of the Teklia produced SDR tools
#119
llivermore
opened
1 year ago
0
Write How-To: Add new tools (mostly referencing existing Galaxy documentation) with examples of our tools as templates
#118
OliverWoolland
closed
1 year ago
1
Write How-To: Produce the SDR's input files
#117
OliverWoolland
opened
1 year ago
1
Write How-To: Configuring the job submission engine (how we've done it - config files etc - and links to advanced info)
#116
OliverWoolland
closed
1 year ago
1
Write How-To: Use Mothra
#115
OliverWoolland
opened
1 year ago
1
Write How-To: Deploy a new instance of the SDR
#114
OliverWoolland
closed
1 year ago
2
Write Tutorial: Simple journey, uploading reference file to reference SDR instance and running reference workflow
#113
llivermore
opened
1 year ago
3
Investigate Pulsar as an additional edge compute option for running jobs
#112
llivermore
closed
1 year ago
0
Create technical documentation
#111
OliverWoolland
opened
1 year ago
1
Check Ansible scripts for sensitive data and make public when safe
#110
OliverWoolland
opened
1 year ago
0
Investigate potential for uploading local images rather than using URIs for running SDR workflows
#109
llivermore
closed
1 year ago
0
Bug: split file tool returns an error with accented characters
#108
llivermore
closed
1 year ago
1
Enhance visualiser for ROIs to include HTR outputs
#107
llivermore
opened
1 year ago
0
Abstract: TDWG 2022: The Specimen Data Refinery: Using a scientific workflow approach for information extraction
#106
llivermore
closed
1 year ago
1
Create a tool for flattening OpenDS objects to CSV
#105
OliverWoolland
closed
1 year ago
1
Investigate HPC / external compute offload
#104
OliverWoolland
closed
1 year ago
2
Update deployment to Galaxy 22.05
#103
OliverWoolland
closed
1 year ago
1
FDO Abstract: Incrementally building FAIR Digital Objects with Specimen Data Refinery workflows
#102
stain
closed
1 year ago
2
Evaluate and test SDR for DiSSCo Technical Team
#101
llivermore
opened
1 year ago
0
Evaluate and get feedback from users on SDR alpha
#100
llivermore
opened
1 year ago
14
Develop an approach for obtaining user feedback on SDR performance
#99
OliverWoolland
opened
2 years ago
2
Galaxy SDR home page not loading
#98
llivermore
closed
2 years ago
2
Evaluate Galaxy tool for reading barcodes
#97
llivermore
opened
2 years ago
9
Add segmentation models for microscope slides and herbarium sheets
#96
llivermore
opened
2 years ago
1
Evaluate Galaxy tool for HTR/OCR
#95
llivermore
opened
2 years ago
3
Evaluate Galaxy Tool for image segmentation
#94
llivermore
opened
2 years ago
1
Implement a set of centrally managed and updated workflows
#93
OliverWoolland
opened
2 years ago
0
Instance should be upgraded to https
#92
OliverWoolland
closed
2 years ago
1
Added georg geocoding tool
#91
benscott
closed
2 years ago
0
Create a Galaxy tool for reconciling taxon names
#90
llivermore
closed
1 year ago
1
Create a Galaxy tool for reconciling people
#89
llivermore
closed
1 year ago
4
Create a Galaxy tool for verdigris detection in pinned insect images
#88
llivermore
opened
2 years ago
0
Set up testing server with DiSSCo technical team for enrichment service evaluation
#87
llivermore
closed
1 year ago
0
Create a Galaxy tool to convert openDS JSON to CSV
#86
llivermore
closed
1 year ago
1
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