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DiSSCo
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SDR
Specimen Data Refinery
Apache License 2.0
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Workflowhub Administration / Adoption
#85
OliverWoolland
closed
2 years ago
1
Provide example workflow inputs in documentation with corresponding data libararies in Galaxy deployment
#84
OliverWoolland
opened
2 years ago
3
Create a bootstrap admin user
#83
OliverWoolland
closed
2 years ago
1
Allow creation of new user accounts with SDR workflow imported by default
#82
OliverWoolland
closed
2 years ago
1
Introduce unit testing for galaxy tools
#81
OliverWoolland
opened
2 years ago
0
Investigate possible use of Galaxy API
#80
OliverWoolland
closed
2 years ago
2
Deliverable 8.4 (December 2022)
#79
llivermore
opened
2 years ago
0
Deliverable 8.3 (June 2022)
#78
llivermore
opened
2 years ago
1
Deliverable 8.2 (May 2022)
#77
llivermore
opened
2 years ago
1
Presentation: SDR at SPNHC Conference
#76
llivermore
closed
1 year ago
2
Write up issues to fulfil user story 3 - enrichment
#75
llivermore
opened
2 years ago
2
Evaluate and recommend certainty/threshold values for promoting data to the specimen record
#74
llivermore
opened
2 years ago
3
Create a Galaxy tool for NER on OCRed text
#73
llivermore
closed
1 year ago
1
Add persistent bulk download per user per batch
#72
PaulBrack
closed
2 years ago
4
Presentation: "Extracting Data at Scale: Machine learning at the Natural History Museum" TDWG 2021
#71
llivermore
closed
2 years ago
0
Abstract: "Extracting Data at Scale: Machine learning at the Natural History Museum" TDWG 2021
#70
llivermore
closed
2 years ago
0
Paper: Landscape Analysis for the Specimen Data Refinery
#69
llivermore
closed
2 years ago
0
Validate/correct text line transcriptions in herbarium sheet dataset
#68
martinteklia
opened
2 years ago
40
Set up a staging server
#67
PaulBrack
closed
2 years ago
5
Create a tool to extract the outputs of a bulk specimen run
#66
PaulBrack
closed
2 years ago
1
Document issues and risks for Laurence
#65
PaulBrack
closed
2 years ago
1
Evaluate IIIF as a bulk specimen input method
#64
llivermore
closed
2 years ago
11
Refactor welcome page
#63
PaulBrack
closed
2 years ago
3
Add workflows to workflowhub
#62
PaulBrack
closed
2 years ago
1
Add icon for ROI visualisation
#61
PaulBrack
closed
2 years ago
3
Add users for testing on public SDR test server
#60
PaulBrack
closed
1 year ago
6
Document challenges found using incremental FDOs in workflows
#59
PaulBrack
closed
1 year ago
5
Combine image download and create opends
#58
PaulBrack
closed
2 years ago
1
Consolidate JSON schemas in a single directory
#57
PaulBrack
closed
1 year ago
3
Make ansible deployment script
#56
PaulBrack
closed
2 years ago
5
Move site out from paulb1 home
#55
PaulBrack
closed
2 years ago
0
Add environment variable creation to deploy script
#54
PaulBrack
closed
1 year ago
2
Create a Galaxy tool using Mothra
#53
llivermore
closed
1 year ago
4
Create a Galaxy tool to manually submit specimens in bulk
#52
llivermore
closed
2 years ago
4
Create open Digital Specimen to DarwinCore exporter
#51
llivermore
closed
1 year ago
1
Trim inputs on create opends tool
#50
PaulBrack
closed
2 years ago
1
Create visualiser for ROIs
#49
PaulBrack
closed
2 years ago
1
Teklia tool does not run when chained together with other tools
#48
PaulBrack
closed
2 years ago
1
Generate issues from SDR PoC release
#47
benscott
closed
2 years ago
6
Update config for docker
#46
benscott
closed
2 years ago
0
Ben/docker
#45
PaulBrack
closed
2 years ago
0
Create a Galaxy tool for image segmentation
#44
PaulBrack
closed
2 years ago
2
Rewrite Galaxy tools in Python
#43
llivermore
closed
2 years ago
3
Set up a deployment pipeline to sdr.nhm.ac.uk
#42
PaulBrack
closed
2 years ago
4
Editing Galaxy tools list has no effect on sdr.nhm.ac.uk
#41
PaulBrack
closed
2 years ago
3
Set up local Galaxy development environment
#40
PaulBrack
closed
2 years ago
0
Create a Galaxy tool OCRing specimen labels
#39
PaulBrack
closed
1 year ago
3
Create a Galaxy tool to read barcodes
#38
PaulBrack
opened
2 years ago
3
Unable to log in to notes.teklia.com
#37
RBGE-Herbarium
closed
2 years ago
1
Error loading images from IIIF server
#36
RBGE-Herbarium
closed
2 years ago
4
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