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Hello,
Instead of just displaying the ROIs of detections with their annotations (as color code), as it occurs by pressing the button "Export to ImageJ --> send region", it would be great to save th…
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The exported DICOM Segs currently store proper information what the
segments encode and from which dataset they were derived. However, there
are still items that need to be done to properly encode w…
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I am not sure wether this is a bug of freec.
My input files are two sorted and base recalibration processed bamfiles, as control file and sample file.
The config file is
[general]
chrLenFile …
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I'm running the training phase of the code brain_tumor_segmentation_models.py,but i find the accuracy is very low,at about 0.2. I run the code with python2.7,and I have increased the number of patches…
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Dear Kamnitsask.
I used your software available at https://github.com/Kamnitsask/deepmedic. In this regard, I trained BRATS 2015 and ISLES 2015. I evaluated the BRATS Testing 2015 and SISS Testing …
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I created my own configuration file with NETWORK parameter 'keep_prob', but I got this error:
ValueError: Unknown keywords in config file: By "keep_prob" did you mean "output_prob"?
"keep_prob" i…
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Currently splitting BAM files into splitters and discordant files to provide @lslochov with a tumor/control pair for testing.
## Pipeline components
- [x] LUMPY
- [x] Delly
- [x] Manta (alt…
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Hi Issam,
Thanks for sharing your project. Please help me in getting the ResUnet.hdf5 pre-trained file.
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I have a general question regarding to the log2 ration of normal reference samples.
I followed the suggestions in documentation to filter the noisy normal samples by doing reference, coverage, segmen…
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See #29 for hardware and session info.
Note that this file is aggressively downsampled for testing purposes, which may be contributing to the error. More than 50 other identically pipelined and pro…