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fpbarthel
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GLASS
GLASS consortium
MIT License
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Structural variant calls?
#158
sdalin
closed
1 year ago
1
Can you share the code for reproduce the Extended Data Fig. 2A?
#157
zhaoliang0302
closed
2 years ago
1
Can you share the input files for reproduce the figures?
#156
zhaoliang0302
closed
2 years ago
2
Tables under ref. patch are not on Synapse
#155
keremw
closed
4 years ago
1
What human reference were the files aligned to?
#154
keremw
closed
4 years ago
1
Patient list in Figure 3A
#153
qhmu
closed
4 years ago
1
prepub update
#152
fsvarn
closed
4 years ago
0
glass env
#151
fsvarn
closed
4 years ago
0
Varn
#150
fsvarn
closed
4 years ago
0
Switch GLSS-SM-R114-R1 >> GLSS-SM-R114-R2
#149
fsvarn
closed
4 years ago
1
Varn
#148
fsvarn
closed
5 years ago
0
Varn
#147
fsvarn
closed
5 years ago
1
Cell cycle and CDKN2A analyses (Figure 3)
#146
EmreKocakavuk
closed
5 years ago
0
Longitudinal gene comparison R script
#145
EmreKocakavuk
closed
5 years ago
0
SQL scripts for longitudinal gene comparison analysis
#144
EmreKocakavuk
closed
5 years ago
0
gene comparison code (test)
#143
EmreKocakavuk
closed
5 years ago
0
Varn
#142
fsvarn
closed
5 years ago
0
Massive figure cleanup
#141
fpbarthel
closed
5 years ago
0
fixed pvacseq module
#140
fsvarn
closed
5 years ago
0
Varn
#139
fsvarn
closed
5 years ago
0
Fixed pvacseq module to run with drmaa
#138
fsvarn
closed
5 years ago
1
Added pvacseq workflow
#137
fsvarn
closed
5 years ago
1
Report Sequenza work-flow
#136
EmreKocakavuk
closed
5 years ago
2
Set cutoff for Sequenza cellularity
#135
EmreKocakavuk
closed
5 years ago
1
Assess impact of purity on M2 calling sensitivity
#134
fpbarthel
closed
5 years ago
1
Collect coverage by gene
#133
fpbarthel
closed
5 years ago
0
Update blocklist
#131
fpbarthel
closed
5 years ago
3
Added snakemake workflow for OptiType
#130
fsvarn
closed
5 years ago
2
GLASS conda environment
#129
fsvarn
closed
4 years ago
2
Unexpected CNV stability in cases sequenced at Dana Farber
#128
Kcjohnson
closed
5 years ago
1
Neoantigen snakemake modules
#127
fsvarn
closed
5 years ago
4
Some LP samples are still being included in M2 calls
#125
fpbarthel
closed
5 years ago
2
Alignment data release 2
#124
fpbarthel
closed
5 years ago
2
Consolidate GLSS-MD-0027 and GLSS-MD-0095
#123
fpbarthel
closed
5 years ago
3
Purge faulty samples from the dataset
#122
fpbarthel
closed
5 years ago
4
Clinical data release 2
#121
fpbarthel
closed
5 years ago
8
SNV calls data release 2
#120
fpbarthel
closed
5 years ago
2
CNV calls data release 2
#119
fpbarthel
closed
5 years ago
6
Added mutational signature figures and additional analyses scripts
#118
fsvarn
closed
5 years ago
1
Add SubClonalSelection files
#117
GeorgetteTanner
closed
5 years ago
0
Varn
#115
fpbarthel
closed
5 years ago
0
dNdsCV WGS vs WXS discrepancy
#114
fpbarthel
closed
5 years ago
2
squared gene/subject mutation matrix
#113
fpbarthel
closed
5 years ago
1
define a list of glioma genes and associated variants
#112
fpbarthel
closed
5 years ago
2
get coverage statistics per gene
#111
fpbarthel
closed
5 years ago
1
curate TERT promoter mutations and mutations in other genes
#110
fpbarthel
closed
5 years ago
2
quantify aneuploidy
#109
fpbarthel
closed
5 years ago
2
get difference between two seg files
#108
fpbarthel
closed
5 years ago
3
Williams et al Neutralitytestr
#107
fpbarthel
closed
5 years ago
1
Updating block/review/allow lists
#106
Kcjohnson
closed
5 years ago
2
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