issues
search
fpbarthel
/
GLASS
GLASS consortium
MIT License
37
stars
13
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Missing M2 calls
#105
fpbarthel
closed
5 years ago
3
Data quality designation
#104
Kcjohnson
closed
5 years ago
5
TITAN CNV calling
#103
fpbarthel
closed
5 years ago
6
Mismatches
#102
fpbarthel
closed
5 years ago
5
Re-evaluate batches
#101
fpbarthel
closed
5 years ago
8
Dead filepoints for GLSS-MD-0112-TP, GLSS-SM-R098-R2 and GLSS-SM-R105-R2 (all WXS)
#100
fpbarthel
closed
5 years ago
1
Update SF sex for sex-specific allosomal CNV calling
#99
fpbarthel
closed
5 years ago
1
Recoding who_diagnosis
#98
fpbarthel
closed
5 years ago
2
Switch GLSS-MD-0112-R2 >> GLSS-MD-0112-TP
#93
fpbarthel
closed
5 years ago
2
Consolidate GLSS-MD-0014 and GLSS-MD-LP06
#92
Kcjohnson
closed
5 years ago
2
Consolidate MD-LP09/MD-0137 and MD-LP20/MD-0112
#91
fpbarthel
closed
5 years ago
3
Big list of important but not urgent issues to be addressed later
#90
fpbarthel
closed
5 years ago
4
Split GLSS-SM-R105-R1 and GLSS-SM-R098-R1
#89
fpbarthel
closed
5 years ago
2
Reassessment of IDH.wt codel tumors
#95
Kcjohnson
closed
5 years ago
4
Sample type inconsistencies between Clinical and Sample data
#96
moskalika
closed
5 years ago
7
Consolidate 14-1034-R1 and 14-1034-R2
#88
fpbarthel
closed
5 years ago
1
Consolidate MD-0025 and MD-LP05
#87
fpbarthel
closed
5 years ago
1
Review variant calls
#85
fpbarthel
closed
5 years ago
1
Review IDH calls
#84
fpbarthel
closed
5 years ago
2
Fetch purity/ploidy from Hoon's Sequenza output
#81
fpbarthel
closed
5 years ago
5
Enumerate cumulative coverage per aliquot
#80
fpbarthel
closed
5 years ago
4
Portion IDs in multisector samples
#71
Kcjohnson
closed
5 years ago
8
Sample quality and coverage
#68
Kcjohnson
closed
5 years ago
6
Copy number and SV calls for WG samples
#67
Kcjohnson
closed
5 years ago
1
Multiple Treatment/KPS Entries Between Surgeries
#66
moskalika
closed
5 years ago
4
Surgery dates question
#65
moskalika
closed
5 years ago
3
Running SomaticSeq on GLASS-WG VCFs
#53
sbamin
closed
5 years ago
6
Create final aliquot UUID and ID mapping table
#50
fpbarthel
closed
5 years ago
3
Mutect2 and VarScan2 Filter Assessments
#47
Kcjohnson
closed
5 years ago
4
SNV panel of normal
#46
fpbarthel
closed
5 years ago
1
Optimize CNV denoising
#45
fpbarthel
closed
5 years ago
10
GATK MarkDuplicates java.lang.OutOfMemoryError despite 72 GB mem
#44
fpbarthel
closed
6 years ago
8
JSON revisions before preprocessing freeze
#43
Kcjohnson
closed
5 years ago
2
Duplicate RGID causing pipeline to crash
#42
fpbarthel
closed
6 years ago
7
Mutect2 genotyping
#38
fpbarthel
closed
5 years ago
10
FusorSV input file formats
#37
fpbarthel
closed
5 years ago
2
DELLY genotyping and post-filtering
#36
fpbarthel
closed
5 years ago
4
Genotype consensus variants across all samples
#35
fpbarthel
closed
5 years ago
3
Merge structural variants using FusorSV
#34
fpbarthel
closed
5 years ago
2
Manta call filtering
#33
fpbarthel
closed
6 years ago
1
DELLY call filtering
#32
fpbarthel
closed
5 years ago
1
LUMPY variant filtering
#31
fpbarthel
closed
6 years ago
1
Delly is taking forever
#29
fpbarthel
closed
5 years ago
4
To-do analyses
#28
fsvarn
closed
5 years ago
2
Delly SV mask origin
#27
fpbarthel
closed
6 years ago
15
Cannot find SVelter executable
#26
fpbarthel
closed
6 years ago
3
LUMPY segmentation fault
#25
fpbarthel
closed
6 years ago
7
VS2 pipeline
#24
fpbarthel
closed
6 years ago
1
VarScan2 outputs IUPAC code calls and blank line calls
#23
fpbarthel
closed
6 years ago
4
Mismatch in sample ROEL-JDG-RV-JDG3
#20
fpbarthel
closed
6 years ago
5
Previous
Next