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![image](https://user-images.githubusercontent.com/75370141/102215032-16d6be00-3f14-11eb-8afb-a3c223fe35df.png)
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Hi ken, do you know how to download the ukbxxx.enc file mentioned by ukbtools?
```
ukb_unpack ukbxxxx.enc key
ukb_conv ukbxxxx.enc_ukb r
ukb_conv ukbxxxx.enc_ukb docs
```
Thanks.
Shicheng
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Hi ken, do you know how to download the ukbxxx.enc file mentioned by ukbtools?
```
ukb_unpack ukbxxxx.enc key
ukb_conv ukbxxxx.enc_ukb r
ukb_conv ukbxxxx.enc_ukb docs
```
Thanks.
Shicheng
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It will be most cost-efficient to store a zarr equivalent to the bgen data as a project-agnostic dataset, but then apply the sample and variant QC filters to create a much smaller subset for downstrea…
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Dear Wei,
I notice you are also the key team member of Pan-UKB. I find a weird thing. I checked there were 4 million SNPs in chrX in UKB imputation data, however, only about 913,562 SNPs in summa…
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Hi, I ran step2 for ukbb sample set but it failed with the error below:
Can you please help me figure out what is wrong and why it failed? I allocated 64g memory to the run.
Thanks - ruth
*** cau…
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Hi developers,
I was using PLINK v1.90b6.18 64-bit (16 Jun 2020) on Linux. I was trying to merge phenotype files of UKBiobank data for all chromosomes, since the UKBB genotype files are split by ch…
Yemch updated
3 years ago
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Filtering the input phenotype data for PHESANT using sample ids that pass genetic data QC results in an error like this:
```
... # Usual output
x630_0_0
The current variable is 630_0
x670_0_0
…
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Using the latest docker in container registry....
eu.gcr.io/finngen-refinery-dev/autorep:4d40b2b
main.py /cromwell_root/finngen_commons/est_ukb_meta/RHEUMA_SEROPOS_meta_out.gz --sign-treshold…
Fedja updated
3 years ago
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Please include:
- the version of pheweb you're using, gotten from `pheweb -h`. If you're not on the latest version, consider upgrading with `pip3 install --upgrade` and trying again.
Hello.
I …