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FINNGEN
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autoreporting
MIT License
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Speed up simple and LD grouping
#215
Lipastomies
opened
1 week ago
0
Grouping speedup
#214
Lipastomies
opened
1 week ago
0
error out with an error message in tabixresource for missing sequence, emit a warning in…
#213
Lipastomies
closed
1 week ago
0
gnomad 4 annotation had faulty transform from chr24 to chrY, fixed that
#212
Lipastomies
closed
1 month ago
0
Update gnomad resource
#211
Lipastomies
closed
7 months ago
0
add r12 release run jsons
#210
Lipastomies
closed
1 year ago
0
add rsids from fg annotation
#209
Lipastomies
closed
1 year ago
0
filter variants without pval, betas from summary statistic files
#208
Lipastomies
closed
1 year ago
0
calculate disk size instead of static limit
#207
Lipastomies
closed
1 year ago
0
add r11 release jsons
#206
Lipastomies
closed
1 year ago
0
Add extra cols top report
#205
Lipastomies
closed
1 year ago
0
Using online LD api in workflows will break post processing step
#204
Lipastomies
opened
1 year ago
0
(non-hard-coded) extra columns missing in top report
#203
Lipastomies
closed
1 year ago
0
Drop pandas from main data pipeline
#202
Lipastomies
closed
1 year ago
1
fix bug where LD partners did not get added to groups where range sta…
#201
Lipastomies
closed
1 year ago
0
fix GWAS summary without header in tabix
#200
zhilizheng
closed
1 year ago
1
Change wdl to fail on failed endpoint
#199
Lipastomies
closed
2 years ago
0
R10 updates
#198
juhaa
closed
2 years ago
0
Fix gws_fetch erroring if phenotype datafile does not contain the phenotype
#197
Lipastomies
closed
2 years ago
0
testihaaraan sisaltoa
#196
Lipastomies
closed
2 years ago
1
added R8 json
#195
Lipastomies
closed
2 years ago
0
fix cs summary reading
#194
Lipastomies
closed
3 years ago
0
Add post processing steps for meta etc
#193
Lipastomies
closed
3 years ago
0
add r2 threshold to top report
#192
Lipastomies
closed
3 years ago
0
Add the used r2 threshold to top reports
#191
Lipastomies
closed
3 years ago
1
DAO for reading credible set data
#190
Lipastomies
closed
3 years ago
1
custom beta match resource does not always work
#189
Fedja
closed
3 years ago
0
in some rare occasions lead_enrichment is NA even gnomad annotation exists
#188
Fedja
opened
3 years ago
1
add --only-cred to limit phenotypes to only finemapped
#187
Lipastomies
closed
3 years ago
0
functional category to come from fg annotation, remove --include-batch-freq
#186
Lipastomies
closed
3 years ago
0
Bug: cs summaries not read properly when including cs info but not using credible grouping
#185
Lipastomies
closed
3 years ago
0
Go through annotations and fix them
#184
Lipastomies
closed
1 year ago
4
add functional variant gene in addition to the consequence
#183
Fedja
closed
3 years ago
5
add custom catalog creation script
#182
Lipastomies
closed
3 years ago
0
Fix region pruning: Change from dict to Region, fix algorithm
#181
Lipastomies
closed
3 years ago
0
Inputs without a header in tabix fail
#180
Lipastomies
closed
1 year ago
1
Incremental ld fetch in LD, credible set grouping
#179
Lipastomies
closed
3 years ago
0
Calculate LD as an as-needed basis, instead of precalculating it for everything
#178
Lipastomies
closed
3 years ago
1
simplify wdl and remove code duplication
#177
Lipastomies
closed
3 years ago
0
fix 404 returning none
#176
Lipastomies
closed
3 years ago
0
online LD api failing if variant not found in finnish imputation panel
#175
Lipastomies
closed
3 years ago
0
Fix for missing phenotype info file
#174
juhaa
closed
3 years ago
0
N ld partners
#173
Lipastomies
closed
3 years ago
0
Add dynamic chisq-based r2 threshold
#172
Lipastomies
closed
3 years ago
0
credible_set_min_r2 wrong
#171
Lipastomies
closed
3 years ago
1
add dynamic R2 threshold for LD clumping.
#170
Fedja
closed
3 years ago
1
add N ld-partners
#169
Fedja
closed
3 years ago
0
Start using gcsfuse in wdl
#168
Lipastomies
opened
3 years ago
0
minimize docker image size
#167
Lipastomies
opened
3 years ago
0
Deprecate allele fetching from dbSNP REST api
#166
Lipastomies
closed
3 years ago
1
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