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Todo:
From #17 we now have forward solver for point sources - electrodes and arbitrary meshes. But it seems to work correctly only for 4 spheres meshes in vaccuum
- [x] scalp electrodes are weird!!…
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Hello, I have a single shell (one b0 and 31 b1 volumes) data with low b-value (b1=1000), 31 directions. Non-isotropic resolution: 2.0 x 2.0 x 2. 4 mm . I applied common pre-processing steps (https://3…
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I tried to use the reconstruction option "mrtrix_singleshell_ss3t" of qsiprep and encountered the following error:
ss3t_csd_beta1: 3 unique b-value(s) detected: 5,999,1998 with 8,50,53 volumes
ss3…
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SS3T-CSD was applied on a single shell b=2000s/mm2 data with a single b0 and no reverse phase encoded data. The screenshots for FOD images of axial slices are attached below, and compared to White ma…
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Hi
Is there an equivalent option available for _ss3t_csd_ that the _-threshold_ option plays for the MrTrix CSD script _dwi2fod msmt_csd_?
I want to play around with the -threshold option to mod…
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Here is some feedback on 64 gradient directions (b=1000mm/s^2) and 1 b0 data I have without the opposite phase encoding direction.
See below the gm_norm, wm_norm, and csf_norm data.
![Screen Shot…
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Hi,
I run some experiments in an old neonatal dataset.
64 direction, 11 b0 data with b=750s/mm2, without reverse B0s/fieldmap and without structural
I did the following experiments:
-respons…
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Hi again @rutgerfick and others,
This is not so much an "issue" as just a small announcement, that might be of use for some of your developments here! So as the title implies, SS3T-CSD is now also …
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Hi,
I started with trying the new SS3T-CSD, using the pipeline https://3tissue.github.io/doc/single-subject.html, (except did not do bias field, and will be using a dilated binary brain mask derived …
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I have single shell (one b0 and 35 b1 volumens) data with low b-value (b1=1000). I applied common pre-processing steps (denoising, unringing, preproc and bias correction). I estimated the response fun…