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PennLINC
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qsirecon
Reconstruction of preprocessed q-space images (dMRI)
https://qsirecon.readthedocs.io/
BSD 3-Clause "New" or "Revised" License
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Add the ability to read in scalars from prior qsirecon runs and map them to bundles or templates
#187
mattcieslak
opened
11 hours ago
0
Create AFQ tract profiles on scalars estimated in qsirecon
#186
mattcieslak
opened
11 hours ago
0
Support output spaces to arbitrary templates and cohorts
#184
mattcieslak
closed
4 days ago
12
The error message for not specifying --fs-license-file is unintuitive
#183
mattcieslak
opened
4 days ago
1
Use abspaths for the ODF plotter
#182
mattcieslak
closed
4 days ago
3
Add Zenodo badge to README
#181
tsalo
closed
5 days ago
1
Reorganize repo to be like other niposts
#179
mattcieslak
opened
5 days ago
0
Prepare for 1.0.0rc1 release
#178
tsalo
closed
5 days ago
2
Disable test_main in the CI integration tests
#177
mattcieslak
closed
5 days ago
2
FOR HBCD: publish on Zenodo to obtain DOI specifically linked to the current version of software
#176
LuciMoore
closed
5 days ago
0
Fix space in ds_qsiprep_5tt_hsvs
#175
tsalo
closed
5 days ago
4
Make PlotPeaks robust enough that we don't need --writable-tempfs in singularity/apptainer
#174
mattcieslak
closed
5 days ago
2
Add in Val's text for connectivity matrices
#173
mattcieslak
closed
6 days ago
0
Fix extension in ds_qsiprep_5tt_hsvs
#172
tsalo
closed
6 days ago
1
Add singleshell benchmarking recon workflow
#171
tsalo
opened
6 days ago
0
pyAFQ pipeline: Use previous analysis derivatives as inputs for masks: seed and brain
#170
tsalo
opened
6 days ago
0
Add HBCD Release1 recon workflow
#169
mattcieslak
closed
6 days ago
2
Add HBCD Release1 recon workflow
#168
mattcieslak
closed
5 days ago
1
[ENH] match to qsiprep nipype/nireports versions
#167
mattcieslak
closed
6 days ago
1
Make connectivity field names compatible with MATLAB
#166
tsalo
closed
6 days ago
2
Fix extension in ds_fs_5tt_hsvs
#165
tsalo
closed
6 days ago
1
Invalid field names in connectivity *.MAT file from `dsi_studio_gqi`
#164
samuelholly
closed
6 days ago
11
[FIX] set TMPDIR before running plot_peaks
#163
mattcieslak
closed
6 days ago
1
HSVS 5TT datasink fails with longitudinal freesurfer
#162
araikes
closed
6 days ago
1
[FIX] get rid of logging error #145
#161
mattcieslak
closed
1 week ago
0
[ENH] Support outputs from qsiprep 1.0.0rc0
#160
mattcieslak
closed
1 week ago
1
Remove underscore versions of all parameters
#159
tsalo
closed
1 week ago
1
Add information about QSIPrep/QSIRecon releases
#158
tsalo
closed
1 week ago
1
[ENH] Better names for the anatomical status variables
#157
mattcieslak
opened
1 week ago
6
Add page documenting output structure
#156
tsalo
closed
1 week ago
1
[CI] Add tests for reading pre-1.0 outputs from qsiprep
#155
mattcieslak
closed
1 week ago
1
Pass DWI file metadata to reconstruction workflows
#154
tsalo
closed
1 week ago
1
Document versioning scheme and QSIPrep compatibility
#153
tsalo
closed
1 week ago
2
Rename `--freesurfer-input` to `--fs-subjects-dir`
#152
tsalo
closed
1 week ago
2
[ENH] Read session-specific anat data
#151
mattcieslak
closed
1 week ago
3
[DOC] Minor addition for skipping connectivity matrices step
#150
chiuhoward
closed
2 weeks ago
2
unrecognized arguments: --atlases
#149
Xinquan-Lu
closed
2 weeks ago
1
[ENH] Handle session-specific anatomical data
#148
mattcieslak
closed
1 week ago
1
Add UKB ingression
#147
smeisler
closed
1 week ago
3
[FIX] dsi_studio_gqi workflow connect
#146
mattcieslak
closed
2 weeks ago
0
calc_connectivity failed to run in dsi_studio_gqi pipeline
#145
samuelholly
closed
1 week ago
4
Switch to ruff for formatting
#144
tsalo
opened
3 weeks ago
0
[CI] Add test for `dsi_studio_gqi`
#143
mattcieslak
opened
3 weeks ago
0
[FIX] workflow connection in dsi_studio_gqi
#142
mattcieslak
closed
3 weeks ago
0
[CI] add mounts for custom atlases and freesurfer in local test runner
#141
mattcieslak
opened
4 weeks ago
0
Ambiguous error from DSI Studio
#140
araikes
closed
6 days ago
1
[BUG] Cryptic NoneType error when --freesurfer-input is set to a non-existent directory
#139
mattcieslak
closed
1 week ago
0
Add HCP/UKB ingression
#138
smeisler
closed
2 weeks ago
2
Multishell ACT HSVS recon workflow uses SS3T response functions
#137
araikes
opened
1 month ago
2
[CI] add hsvs test
#136
mattcieslak
closed
2 weeks ago
1
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