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Hi, @eblerjana
I found that several samples's peak is wrong according the pangenie log. So would you mind teliing what's the influence of these peak? Is there any way to set peak?
Here is a ex…
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Hello!
I'm analysing the trunk's microbiome of a tree (MiSeq 16S V4). Since it's woody tissue, is expected to have very low diversity, therefore, my ASV abundance table has samples with very low fe…
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Hello,
I ran rgi main for genome assemblies as below:
`rgi main -i sample1.fasta -o sample1 -a DIAMOND -n 24 --clean`
Then I ran rgi heatmap as below:
`rgi heatmap -i json_files -o hm_outp…
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Hi. Great package!
Had a question regarding performing intra-sample abundance comparisons. Do you think this is feasible/appropriate to use scCODA for?
I.e. You have a covariate that doesn't de…
n-hal updated
2 months ago
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Add tests for [MetaCoAG](https://github.com/metagentools/MetaCoAG) in `gbintk`.
- [ ] test spades input
- [ ] test megahit input
- [ ] test flye input
- [ ] test that the [bins have the correct …
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Hi
I am facing an issues,
When I try to ran
**mpse2 %%
mp_rrarefy (.abundance=Abundance) %>%
mp_cal_rarecurve (.abundance=Rare Abundance, chunks=500)** the code takes lot of times and does not …
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Hello,
I'm currently working on data preprocessing from multiple Illumina runs.
The first run was sequencend using a v2 kit, while the other runs used v3, which gives me different amplicon sizes (…
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Hello,
when I do a graph on the relative abundance for the genus of my data, NA appears on the x axis.
Is there a function to eliminate the NA from the graph? Or do I have to filter my data dif…
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Hello developers,
Thank you for the tool. I am benchmarking taxor version: 0.1.3 SeqAn version: 3.4.0-rc.1on ZYMO sample sequenced on ONT using prebuilt database containing Archaea, Bacteria, Fung…
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Hi,
First of all, thanks for creating this tool. It seems very neat for crunching down picrust2 output.
I am trying to run `pathway_errorbar` function but getting the following error:
```
Er…