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As of now VespaG is not able to handle fasta files containing non-essential amino acids (e.g. U or O) or undetermined amino acids (X). Running `vespag predict` with such a fasta file will lead to a Va…
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Dear Sirah Developers/Users,
Is there some documentation on generating parameters for new residues like norleucine, for example?
I would be really grateful for any suggestions.
Best,
Amin.
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hi, this is a wonderful work!
I'm wondering if I can fix part of the peptide. For example, I want the generated peptides to be SDRXXXXDDG, and I want the model to help me design the X residue. If not…
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**Background**
The logic of the current colour scheme for amino acids is not as good as it can be. The colours should be changed, for them to be more intuitive and useful to the user.
The chosen…
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#### Current behavior:
31 genes are discovered to be uncorrelated with their corresponding reactions in `Bile acid biosynthesis`/`Bile acid recycling`
| Gene | UniProtID | Reaction | GPR | C…
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I was wondering whether it would be possible to use this tool to predict toxicity of peptides that contain unnatural amino acids.
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Dear BFEE2 team,
I am using BFEE2 to determine the binding energy between two large proteins (~150 amino acids for the ‘ligand’ and ~400 amino acids for the ‘protein’, respectively). I am using the…
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@frees86
Along with DOM massic concentrations, should we define volumic soil concentrations in mol of labile organic components (hexose, amino-acids, mucilage and cells) per m3 or in mol of C per m3 …
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Dear MaxQuant team,
Would it be possible to define new one-letter symbols for unnatural amino acids in MaxQuant? That would be very helpful.
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- we should also add basic textbook biochemistry taxon constraints - e.g essential amino acids in mammals
_Originally posted by @cmungall in https://github.com/geneontology/go-ontology/issues/2…