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### Description of the bug
When COMBINE_DATA() is run (when a sample is repeated) the path does not seem to be staged and the step fails.
I have tested this on both `main` and `inx_id` branches.
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Dear authors,
Thank you for your work, I was testing your software on several datasets and I obtained this error message:
```
[raven::] loaded 9004 sequences 0.110631s
[raven::Graph::Construct] …
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Hi everyone,
Thank you for developing this useful tool! I'm currently trying to run amplicon_sorter.py on a large dataset (~6M reads) with 3x random sampling. Here’s the command I’m using:
`pyth…
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[Suggestion to add amplicon resequencing data-processing functionality, brief description of new scripts to aid in this, and request for guidance on unit testing or code review]
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## Justification …
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### Contact details
kiledal@umich.edu
### Dataset Title
Lake Erie Harmful Algal bloom associated communities
### Describe your dataset and any specific challenges or blockers you have or anticipat…
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The accession BK010471 is for a crAssphage that is ubiquitous in human gut metagenomes ([link](https://www.nature.com/articles/ncomms5498)), and in particular is found in the 454 data set SRR073439.
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Hi, I'm a new to cnvkit. Thanks for this excellent tool. As it was pointed out in the documentation, CNVkit is primarily designed for use on hybrid capture sequencing data, where off-target reads are …
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Hello! It's me again. Trying to understand what went wrong with my search (false positives?) and, in the process, figure out a bit more of the theory.
Search ID: https://logan-search.org/dashboard/…
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Hi,
Based on the error estimation - it requires te same sequence length. Can the model be adjusted to account for variable lengths are many molecular markers will amplify variable lengths, e.g., inde…
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I'll use this issue to document steps to build a `k=31,scaled=1000` index for SRA metagenomes. This is the same process used for the current `k=21,scaled=1000` index in branchwater.sourmash.bio, but c…