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I've tried to parse our test set of Spanish AMR with your xl-amr cross-lingual parser with this command:
python -u -m xlamr_stog.commands.predict --archive-file C:/Users/user/Documents/AMR/Spanish…
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Hi,
According to the CMakeLists.txt in ssc_planner, some packages are still missing such as:
- behavior_planner
- pubg_planner
- onlane_motion_planner
Also, while I tried to build the workspa…
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At the prediction step, if the input file contains only one sentence, it results in an error. For example, after all the preprocess was applied to the AMR 2.0 (LDC2017T10) data (following the steps i…
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# AMR Parsing as Sequence-to-Graph Transduction
## 1. Environment Setup
The code has been tested on **Python 3.6** and **PyTorch 0.4.1**.
All other dependencies are listed in [requirements.txt…
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Hello,
I have noticed that when running LOFTEE, the LoF_flags are not being properly annotated; they are always blank in the output. So, for instance, rs201677741 from the ExAC vcf is annotated by…
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Hey Martin,
I have hit the following error using Mykrobe v0.13.0 predict on an E. coli sample with custom probes. The command, the error I hit and a link to the data I am using are below:
`singu…
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The default behavior of Castro should be to use the values of the runtime parameters that give the best accuracy or performance. Some default values have not been updated in a long time, despite code…
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A non-subcycling AMR version of our code (in the Strang build, not the simplified SDC build) would do the following (assumes two levels for simplicity, and ignores burning for now):
(1) Compute old…
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Hi team
Thanks for the great toolkit. I was wondering if this could be updated to work with later Ensembl vep releases (the latest as of Feb 2023 is 109.3 - https://github.com/Ensembl/ensembl-vep/r…
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## Bug description
Using the meso/microscale forcing (`ABLMesoForcingMom` source term) seems to fail on GPU's for me, but works fine on CPU's. Failure here is observed when the velocities blow up (i…