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Now that the [ancombc2 paper](https://www.nature.com/articles/s41592-023-02092-7) has been published, it would be nice to add this method into q2-composition. @FrederickHuangLin we'd love to collabora…
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Dear Huang,
Thank you for the ANCOMBC package.
When I run ancombc2 - with fixed and random effects (in R 4.4.0) - I noticed that for some of the features all the "lfc_" columns appear as NA and …
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Hi,
I attempted to run the ancombc2 function using the example provided in ?ancombc, but it resulted in an aborted R session.
Could you please help me with fixing this issue?
Thanks,
Dana.
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When I ran ancombc2, it reported an error "Error: subscript contains invalid names".
I have tried both tse and transformed phyloseq object.
In my previous project, everything was ok. But this time, …
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Hello!
I am using the function ancombc2 for the first time and for one group (containing 2 levels to compare), which I want to compare in the analysis, I got no output and the error;
"Error in { :…
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I tried to do an ancombc2 comparison between 2 groups on a genus level. When I don't filter out low abundance taxa or using filter down taxa below 0.01%. Only the ancombc2 function work when I use 0.…
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Hello,
I'm trying to run ANCOMBC2 for an interaction term. As suggested in other answers I have made it manually. I have run the following code for the main effects and it works perfectly:
```{R…
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First, thanks for developing and maintaining this amazing tool!
I got warnings while running `ancombc2` with the following command. These happened with my dataset, but not with the example datasets…
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I am trying to perform differential abundance for microbial community composition by ANCOMBC2 using R.
I have 3 samples from 4 dependent groups (group 1, group 2, group 3, group 4) each group contain…
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Hi,
I have a question regarding error message I'm getting while running ancombc2. It says one of the taxon has zero variance and in fact in one of the group there are all zeros. However, I have struc…