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qiime2
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q2-composition
BSD 3-Clause "New" or "Revised" License
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ANCOMBC unable to load phyloseq
#135
cherman2
opened
1 day ago
0
da-barplot viz should allow for copy/pasting feature-ids
#134
cherman2
opened
2 weeks ago
1
BUG: ancombc no longer works with '*' as the interaction term in the formula
#133
lizgehret
opened
1 month ago
4
NEW: add ancombc2 to composition
#132
lizgehret
opened
5 months ago
2
BUG: sample IDs that look like scientific notation are treated as numbers
#131
colinbrislawn
closed
2 months ago
24
BUG: ANCOM-BC Fails if sample IDs look too much like exponent
#130
cherman2
closed
2 months ago
9
Hyphens in metadata column names passed to ancombc's --p-formula being interpreted as formulaically meaningful
#129
colinvwood
closed
8 months ago
1
CI: Updates to ci-dev workflow
#128
hagenjp
closed
9 months ago
0
MAINT: removes neg-lb param
#127
hagenjp
closed
10 months ago
1
BUG: remove neg-lb param
#126
lizgehret
closed
10 months ago
0
enable user to increase the viewable length of the y-axis labels
#125
brett-van-tussler
closed
11 months ago
4
maint: updating verbiage for input descriptions in ancombc
#124
lizgehret
closed
1 year ago
0
IMP: Update --p-reference-levels input type within ANCOM-BC as a Collection
#123
lizgehret
opened
1 year ago
0
require user to define the level delimiter
#122
gregcaporaso
closed
1 year ago
1
da-barplot makes assumptions about feature id schema
#121
gregcaporaso
closed
1 year ago
0
BUG: dynamic error for reference_level column::value based on too many vs too few separators
#120
Oddant1
closed
1 year ago
3
BUG: error for reference_level column::value should be dynamic based on too many vs too few separators
#119
gregcaporaso
closed
1 year ago
0
CI: add additional tests in commands section
#118
lizgehret
closed
11 months ago
0
BUG: Fixes URL space issue in DA plots
#117
cherman2
closed
1 year ago
1
BUG: single ref level string splitting in tabulate viz
#116
lizgehret
closed
1 year ago
5
BUG: tabulate viz does not handle single reference level values or default dummy coding
#115
lizgehret
closed
1 year ago
0
da-barplot does not handle spaces in metadata values
#114
cherman2
closed
1 year ago
0
IMP: da-plots should take `FeatureData[Taxonomy]` as optional input
#113
gregcaporaso
opened
1 year ago
2
rename ancombc -> ancombc2
#112
colinbrislawn
closed
1 year ago
6
TST: fix da_barplots tests to match new test data
#111
ebolyen
closed
1 year ago
0
bib: citation updates
#110
lizgehret
closed
1 year ago
1
IMP: intercept column toggle on tabulate viz
#109
lizgehret
opened
1 year ago
0
add support for generating bar plots from ANCOM-BC data
#108
gregcaporaso
closed
1 year ago
3
MAINT: disallow numerical md cols for ref level param
#107
lizgehret
closed
1 year ago
4
BUG: error on ref level value IDs not in table
#106
lizgehret
closed
1 year ago
0
IMP: tabulate viz additions
#105
lizgehret
closed
1 year ago
1
FEAT: new visualization for ancombc results
#104
lizgehret
closed
1 year ago
0
MAINT: updating CLI help text
#103
lizgehret
closed
1 year ago
0
BUG: ANCOM-BC help text updates
#102
lizgehret
closed
1 year ago
0
BUG: chosen intercept column in metadata but not table will default to alphabetical order
#101
lizgehret
closed
1 year ago
0
IMP: add character escaping in formula/group parameters for ancombc
#100
lizgehret
opened
1 year ago
4
bug: tabulate viz & testing/usage examples
#99
lizgehret
closed
1 year ago
3
bug: ancombc viz, tests, usage examples
#98
lizgehret
closed
1 year ago
0
ci: force re-render again
#97
lizgehret
closed
1 year ago
0
ci: force re-render for new skbio version
#96
lizgehret
closed
1 year ago
0
NEW: adds ANCOM-BC & DataLoaf Tabulate viz
#95
lizgehret
closed
1 year ago
1
NEW: dataloaf tabulate visualizer
#94
lizgehret
closed
1 year ago
1
ver: ancombc 3.16 updates
#93
lizgehret
closed
1 year ago
0
IMP: adds `filter_missing` flag to ancom
#92
valentynbez
closed
1 year ago
4
new: dataloaf tabulate visualizer
#91
lizgehret
closed
1 year ago
0
Filter out samples with missing values
#90
ebolyen
closed
1 year ago
0
PIN: use global scipy pin
#89
ebolyen
closed
1 year ago
0
FEAT: ANCOM-BC R wrapper
#88
lizgehret
closed
1 year ago
3
FEAT: gutting q2-comp to re-write as R wrapper for ANCOM/ANCOMBC/SECOM
#87
lizgehret
closed
2 years ago
0
FEAT: gutting q2-comp to re-write as R wrapper for ANCOM/ANCOMBC/SECOM
#86
lizgehret
closed
2 years ago
1
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