qiime2 q2-composition issues

qiime2 / q2-composition

BSD 3-Clause "New" or "Revised" License

5 stars 28 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

FEAT: gutting q2-comp to re-write as R wrapper for ANCOM/ANCOMBC/SECOM

#86 lizgehret closed 2 years ago
1
dep: pandas >=1.2.5, biom 2.1.12, skbio 0.5.7

#85 thermokarst closed 2 years ago
0
dep: pin skbio, pandas, and biom

#84 thermokarst closed 2 years ago
0
Order of each group value in metadata randomly changed when rerun ancom

#83 satopan closed 1 year ago
1
Automatically drop `NaN` values when executing `ancom.py`

#82 valentynbez closed 2 years ago
1
FEAT: Add a classic CLR transform

#81 jwdebelius opened 2 years ago
0
ci: update recipe

#80 thermokarst closed 3 years ago
0
ci: library integration

#79 thermokarst closed 3 years ago
0
Ancom w testing

#78 antonhibl closed 2 years ago
12
The F-score appears to be missing

#77 mortonjt closed 1 year ago
1
Upgrade to ANCOM-BC

#76 jwdebelius closed 2 years ago
7
dep: pandas 1

#75 thermokarst closed 3 years ago
0
new: python 3.8

#74 thermokarst closed 3 years ago
0
maint: fixed pandas testing deprecation

#73 Keegan-Evans closed 3 years ago
0
HACK: Temporarily remove vega editor from ancom

#72 Oddant1 closed 4 years ago
0
Update Ancom Plots to Vega 5

#71 Oddant1 closed 1 year ago
1
BUG: handle Infinity in ancom

#70 thermokarst closed 4 years ago
1
BUG: invalid index reference

#68 thermokarst closed 4 years ago
0
WIP: Ancom2

#67 nbokulich closed 2 years ago
1
update_ancom.py

#66 Jiung-Wen closed 5 years ago
0
MAINT: Travis, bump to python 3.6

#65 thermokarst closed 5 years ago
0
MAINT: Updates for python 3.6

#64 thermokarst closed 5 years ago
0
MAINT: Updating copyright headers for 2019

#63 ChrisKeefe closed 5 years ago
0
Revert "Downgrade pandas to <0.23 instead of >=0.23"

#62 ebolyen closed 5 years ago
5
Update index.html

#61 heyhyungi closed 5 years ago
1
Update for flake8 v3.6

#60 ChrisKeefe closed 5 years ago
0
ANCOM volcano plot missing plot data TSV

#59 thermokarst closed 5 years ago
0
Downgrade pandas to <0.23 instead of >=0.23

#58 ElDeveloper closed 6 years ago
11
Vega-ify ANCOM

#57 thermokarst closed 6 years ago
0
Bokeh plot appears to be broken

#56 thermokarst closed 6 years ago
7
fixed apply TypeError related to pandas 0.23 upgrade

#55 nbokulich closed 6 years ago
0
pandas 0.23.0 changes appear to break existing ancom method

#54 thermokarst closed 6 years ago
0
DOC: add citation

#53 ebolyen closed 6 years ago
2
Add citations

#52 ebolyen closed 6 years ago
0
ancom: add text wrapping for mouse hover-over in volcano plots

#51 nbokulich closed 1 year ago
5
MAINT: new Metadata updates

#50 jairideout closed 6 years ago
0
MAINT: update copyright year; travis

#49 ebolyen closed 6 years ago
0
update to ANCOM 2.0

#48 gregcaporaso closed 2 years ago
7
incorporate taxonomic information into ANCOM output

#47 nbokulich closed 1 year ago
3
BUG: Fix missing volcano plots and tables

#46 thermokarst closed 7 years ago
0
BUG: Drop `statistical-test` param from `ancom`

#45 thermokarst closed 7 years ago
0
BUG: `statistical-test` methods don't all work

#44 thermokarst closed 7 years ago
2
Empty volcano plot

#43 ebolyen closed 7 years ago
1
MAINT: update to use `q2templates.df_to_html`

#42 jairideout closed 7 years ago
0
TST: update tests to match metadata requirements

#41 ebolyen closed 7 years ago
1
ENH: Makefile support

#40 thermokarst closed 7 years ago
0
MAINT: Cleaning up to bring back into core

#39 thermokarst closed 7 years ago
0
ENH: Adding in multiplicative replacement

#38 mortonjt closed 7 years ago
3
DOC: add plugin description

#37 gregcaporaso closed 7 years ago
0

Previous Next