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Hello,
In our lab, we are working on macOS computers, and we have an error message (cf. picture bellow) that indicates that Bio-Formats Importer tries to open a .DS_Store file... Is it possible to pr…
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I get the following `java.lang.UnsatisfiedLinkError` when I try to open a .czi image:
```
11:51:31.270 [Preview] DEBUG loci.common.NIOByteBufferProvider - Using mapped byte buffer? false
11:51:31…
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This issue starts defining the Bio-Formats API allowing readers to be be discoverable. For more background and history, read the following GitHub [Pull Request](https://github.com/openmicroscopy/biofo…
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I've asked Josh Moore for a csv (or whatever) from http://www.openmicroscopy.org/site/support/bio-formats5.2/supported-formats.html with:
Format name
Format specification URL (1)
bio-formats URL (2)
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* Bio-Formats Importer
* TrackMate
* 3D Viewer
* ImageJ ⇆ ImageJ2 data conversions – basic tests like using both in the same script
* Script Editor with popular languages: macro, Groovy, Jyt…
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Bioformats2raw creates ome.zarrs with "0" top-level directory (`"series" : [ "0" ]` in `OME/.zattr`). These import fine. But when you remove this top level directory, it reports ("no imports found"):
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## Bug:
Using the presective transform in all models is a mistake.
## Bug reproduction:
Take [Eltlinde_F10] for example, the image is clearly not consistent.
## Solution:
Use affine transform…
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Following https://github.com/IDR/deployment/blob/master/docs/operating-procedures.md#bio-formats-cache-regeneration with step by step notes...
The instructions there distribute the work across all …
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When testing https://github.com/ome/omero-web/pull/536 on idr-testing, I noticed this issue which I think Seb mentioned was due to a Bio-Formats update (see below)
Deployed on idr-testing from bran…