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We need to do some symmetry operations on the asymmetric unit. An asymmetric unit is the smallest unique set of atomic coordinates needed to describe the repeating unit of a crystal. If we have a het…
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Hello,
I am using Enrichr in "R" for my pathway analysis. It is not references in the package description https://cran.r-project.org/web/packages/enrichR/enrichR.pdf how to define the background in…
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Eg pull data from:
Garda, Samuele et al. “RegEl corpus: identifying DNA regulatory elements in the scientific literature.” Database: The Journal of Biological Databases and Curation 2022 (2022): n.…
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In the preliminary version of the practical 1, I try to cover following topics:
- [ ] Introduction to Imaging-Based Spatial Transcriptomics (Xenium Platform)
- Overview of Xenium technology and it…
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### Background
A biological pathway is a network consisting of interactions between biological molecules (e.g. proteins and chemicals) in a cell that lead to a certain product or a change. Research…
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Currently, the memote report expects reaction annotations to biological databases on the exchange reactions and biomass reaction. Exchange reactions are purely mathematical constructs to enable a FBA …
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- [x] Introduction to Biological Databases
- [x] Introduction to NGS sequencing
- [x] Introduction to sequence alignment
- [x] Introduction to Phylogenetics
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Each offering of the Biological Databases course is housed in a combined MediaWiki installation + underlying database. They are currently on computer science servers and should be backed up into separ…
dondi updated
8 years ago
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**What is your idea?**
Articles in the Europe PMC database are already annotated by a range of services ([see list here][1]). Maybe we can use this annotations in Annotate Them All!
They can be c…
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The merged prefix map now uses uppercase RDF rather than the canonical `rdf`
The reason for this is likely because the merged prefix map is based around the assumption that the correct canonical pr…