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* **InterPro ID / label**
IPR012080
* **Example sequences with problematic annotation (ID + gene/protein name):**
https://www.ebi.ac.uk/QuickGO/annotations?geneProductId=P78780&aspect=biolo…
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Hi authors, great paper just a couple of nitpicks in the paper that might make it a little clearer.
1.
To use it you have to provide a set of contigs resulting of a de novo transcriptome assembly…
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> http://dx.doi.org/10.1371/journal.pone.0141287
>
> **Motivation:** We introduce a new representation and feature extraction method for biological sequences. Named bio-vectors (BioVec) to refer to…
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The mammal tree based on hemoglobin doesn't work well, I think because the sequences are too similar, but maybe because we need a better distance metric for the aligned sequences that counts using blo…
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### Bioengineering and Genetic Bits in Database Management Systems (DBMS) Infrastructure
#### Bioengineering in DBMS
Bioengineering, particularly in the context of synthetic biology and genetic engin…
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| Difficulty | Expected Duration | Possible Mentors |
|-|-|-|
| Medium | 175h | @reece |
### Summary
SeqRepo provides a simple interface to biological sequences and subsequences, with a single…
reece updated
1 month ago
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> Convolutional neural networks (CNNs) have been shown to perform exceptionally well in a variety of tasks, including biological sequence classification. Available implementations, however, are usuall…
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### Submitter Name
Reece Hart (@reece)
### Submitter Affiliation
MyOme
### Requested By
seqrepo community
### Lead(s)
@reece
### biocommons Repo
seqrepo
### Project Deta…
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Using the PMID for PAINT is not clear to many groups, so I have restored GOREF_0000033 and updated it
> The Phylogenetic ANnotation using Gene Ontology (PAN-GO) method annotates evolutionary trees …
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I noticed that the PFM function does not run on protein sequences. Is there a biological rationale for this or is this simply missing functionality?
```julia
pfm_matrix
ArgumentError: sequence el…