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TypeError Traceback (most recent call last)
in ()
----> 1 update.update_biomass(d,model_…
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#### Rather than specific only to the biomass reaction as the objective function extend tests to include any set objective.
Some models may not have a biomass objective function, but rather altern…
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Currently, only one biomass function is allowed, or should be present for a given model. However, in a community model, with multiple organisms being placed together in one model, multiple biomasses …
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Hi, when you built Escherichia coli ME-model, why did you divide the iJO1366 biomass equations into several different equations such as biomass_constituent_demand, lipid components and DNA demand req…
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Hi, me again..
We are using iMAT++'s integrated FVA function, while also using the CS models separately. While doing FVA on those models using COBRA we were puzzled as to how iMAT++ does FVA.
I…
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Hello,
**Installation & problems**
I downloaded and installed Architect as described for the Docker installation. The installation took a while and I had to reinstall the program on another comput…
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We have been editing the biomass file for the S. oneidensis 211586.9.906 model to reflect the published version of the model, but when we attempt to gapfill with this as the new BOF on complete media,…
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#### Problem description
> Some biomass precursors are taken from the media and directly consumed by the biomass reaction. It might not be a problem for some ions or metabolites with known auxotrop…
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Hi!
I am using iMAT++ to create a model based on RNA-seq data, but for some of my treatment models, the algorithm sets the biomass function as inactive.. Is there a way to make this reaction always…
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Hi! Thanks for supporting this package,
I am trying to use relax_lc (same is in the example with relax_dgo). I am using EColi_BL21 from the package replicating the relax_dgo example. Is it possible…