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These seem to be CVMFS
Identified so far
* `dm3`
* [testing history](https://usegalaxy.eu/u/jenj/h/galaxy-workflow-galaxy-hi-c-1) using the [hic workflow in this tutorial](https://training.gala…
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Either remove that genome from the list, or correct the dbkey in the data tables. It is probably truncated in one of the columns.
If selected, STAR indexes are "not found". Might have problems wit…
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Hi, zhangkai:
I am using SnapATAC2-v2.7.0
Due to experimental issues, I obtained a poor quality dataset where R1 consists entirely of fixed sequences, with R1 mapping accounting for only 6.74% of to…
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Hello,
Sorry to open up another issue! I am struggling with continuous slurm "TIMEOUT" errors despite setting my runtime to be 1080 minutes (7 days, the maximum length for the partition on the clu…
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I am running **ert/bwa-mem2 mem** and I have a weird segmentation error occurring, which is file specific to the fasta file and happens in about 1/4 of my assembled genomes. It is very annoying as it …
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Hi,
I manage to make snpArcher work on dataset with medium size genomes (400Mb) but I got errors for bigger genomes (2Gb) and when job are taking to much time and ressources. I think I set the slur…
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Hi author:
I am now using juicer to dealing my HI-C data, but when i run the script, i got an error, which is "invalid argument：mem --"5"". I opened the juicer.sh and found that in line 364, ther…
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bwa command line from GATK: `bwa mem -K 100000000 -p -v 3 -t 16 -Y $bash_ref_fasta`
bwa mem reference page: https://bio-bwa.sourceforge.net/bwa.shtml
What the options mean:
```
-K: minimum seed len…
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I encountered the following error when I test example data. Is there any solution to this error? Thanks.
[PEM-Q] primerChrom: chr15
[PEM-Q] primer_start: 61986633
[PEM-Q] primer_end: 61986652
[P…
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Hello Team,
Thank you for the wonderful tool. However, I have two questions:
When I run `RAT,` it gives an error related to the reads with the following message. From what I understand, my `FAST…