-
`cazy_webscraper` is not identifying the NCBI protein version accessions correctly, and is unable to pair up the downloaded data with data in the local CAZyme database.
```bash
Traceback (most rec…
-
Extremely large CAZy database releases is increasing the memory intensity of `cazy_webscraper`, making it difficult to run the tool on standard office equipment (see [issue at `cazomevovle`](https://g…
-
## Is your feature request related to a problem? Please describe.
A clear and concise description of what the problem is. E.g. I'm always frustrated when [...]
Atm each command in `cazy_webscraper…
-
As mentioned in PR #102, `cazy_webscraper` was designed to use `sqlalchemy` version 1.4.20.
At some point `cazy_webscraper` should be updated to use `sqlalchemy` version 2.x.
-
I got an error from `bioservices` when it was running the `cazy_webscraper` application. I opened an issue [there](https://github.com/HobnobMancer/cazy_webscraper/issues/111).
```
File "/usr/local…
-
Tried generating a local CAZy db locally on my mac (8GB RAM), rather than on a cluster with more memory. Half way through parsing the CAZy text file (51%) it maxes out my memory. Usage statistics sugg…
-
Please complete this report in full and as much detail as possible. It will help with getting the bug fixed far sooner!
## Describe the bug
A clear and concise description of what the bug is.
Ple…
-
Please complete this report in full and as much detail as possible. It will help with getting the bug fixed far sooner!
## Describe the bug
Error downloading database
## To Reproduce
Please in…
-
When trying to build a new local CAZy db with the build_cazy_db command, it gets to 24% of the batches retrieving the tax info from NCBI and throws an error saying its failed to parse the XML data. Th…
-
Error occurs when trying to retrieve the tax ids from NCBI for adding taxonomic information to the 2 output tab delimited lists when running the get_dbcan_cazymes command on the St Andrews Kennedy Sup…