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Extracted from #3219 where we discussed the confusion of the fields `name`, and `clone_id`, and `cell_id` in `ClonedCell`.
## The Current Situation
- `ProvisionedCell` has a field `name` specif…
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### If you are filing this issue based on a specific GitHub Discussion, please link to the relevant Discussion.
This issue follows the PR https://github.com/AlexsLemonade/OpenScPCA-analysis/pull/844 …
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Hi,
Excuse me. I am doing a project about TAD boundaries using scm3C-seq data of brain tissue. I can't search your cell-type identification results. Can you send me clusters and cell-type identific…
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Hi,
I am generating a grid using the latest release of dfm_tools (0.24.0), and using the dfmt.meshkernel_get_illegalcells method to identify non-orthogonal cells. However, I encountered cases where…
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Hey there,
I've been diving into your ClusterDE tutorial ([Perform ClusterDE on a PBMC dataset](https://songdongyuan1994.github.io/ClusterDE/docs/articles/ClusterDE-PBMC.html)) and it's pretty cool…
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Hi Nanostring team,
Will the reference matrices be updated with more genes based on experiments from the 6,000 plex assay? If this is in development, would the 6,000-plex assay matrices allow for t…
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Paper: https://www.nature.com/articles/s41592-023-01938-4
Abstract:
Joint profiling of chromatin accessibility and gene expression in individual cells provides an opportunity to decipher enhancer-d…
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Hello,
Thanks for this very useful package!
I just have a few questions after runnning on single-cell ATAC-Seq libraries generated from the 10X multiome kit. I ran using the following commands:
…
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Hi,
I encountered an out-of-memory (OOM) error while executing the cell type identification step. Despite running the process on a machine equipped with 256 GB of RAM, the operation was terminated …
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Hi,
Congrats on the publication and thank you for this tool.
I looked through the paper and the tutorials, and maybe I missed it, I would be grateful if you could just provide a bit of information r…