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Add functions for UI use into cellorganizer tools or a different file
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https://github.com/murphygroup/cellorganizer-python/blob/901106e590b7b7ca1168377dc7d5ae6425b57a60/cellorganizer/tools.py#L128
after this line
* copy files from folder into current working direct…
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Create functions to call the tools from BioFormatsCLI.
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Model is missing
```
[W 02:27:27.176 NotebookApp](B Notebook demos/3D/demo3D00/demo3D00.ipynb is not trusted
[I 02:27:27.332 NotebookApp](B Kernel started: 9ac1f1fe-ac35-461c-b6b0-6dd70d97757c
…
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Need to add models
```
Warning: Unable to open or read model files
> In slml2report (line 49)
ans =
'Error using load
Unable to read file '/home/murphylab/cellorganizer/models/3D/nu…
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I will remove this demo from this distribution. Please fix in next release
```
[W 02:14:16.673 NotebookApp](B Notebook demos/2D/demo2D07/demo2D07.ipynb is not trusted
[I 02:14:16.860 NotebookApp]…
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I don't know why it is not working
```
Running deployed version of slml2img
Attempting to read input file input.txt
Evaluating lines from input file
Setting synthesis option
Checking existence…
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The demo does not work
```
[I 02:40:32.195 NotebookApp](B Adapting to protocol v5.1 for kernel 096f6a5d-30d5-4b7b-8a0c-a7261209cb73
Running deployed version of slml2img
Attempting to read input …
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I will remove this demo from this distribution. Please fix in next release
```
[I 02:10:46.717 NotebookApp](B Saving file at /demos/2D/demo2D06/demo2D06.ipynb
Running deployed version of slml2img…
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```
Singularity cellorganizer.simg:~/Documents/singularity-cellorganizer/demos/2D/demo2D01> vi input.txt
vi: symbol lookup error: /usr/lib/x86_64-linux-gnu/libpython3.6m.so.1.0: undefined symbol: XM…