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Hello,
I'm trying to set up my first PALM using CIFTI outputs from hcppipelines - I know that CIFTI support is limited here, but PALM was recommended to me by Mathew Glasser so I believe it's doab…
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I'm planning to use version 23.1.5 (once it's released), since it has some nice CIFTI improvements.
Here are my planned settings:
```
--output-spaces func:res-native T1w:res-native MNI152NLin6A…
tsalo updated
8 months ago
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### What happened?
Hi,
After running the CIFTI pipeline with --project-goodvoxels, I tried to load the sub-###_ses-###_task-rest_space-fsLR_den-91k_bold.dtseries.nii on Left and right midthickne…
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Hi I found some issues with the code to calculate movement:
1) The notch filter was applied multiple times instead of changing the "order" of the filter. Running the filter multiple times seem to a…
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I am encountering an error when running my script using the makeTissueMasks function from fmriprepciftify_helpers.py. The error seems to be related to the number of values being unpacked from the data…
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fMRIPrep version 20.2.0, singularity container
dataset: ds001110 sherlock merlin
ran with additional flags:
--task-id MerlinMovie --cifti-output --skull-strip-t1w skip --nthreads 4 --skip_bids_vali…
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I see from the source code you support NIfTI-1, but it's unclear if you support NIfTI-2 too, and both endian formats.
https://brainder.org/2015/04/03/the-nifti-2-file-format/
I think it should b…
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I noticed that the Schaefer parcellations were added over a year ago. Are they the originally published parcellations?
The labels and the parcellation were updated recently. I don't think the parce…
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Hi,
As you mentioned you use data which has been preprocessed with FMRIPREP. But in FMRIPREP no denoising is done. So is this step done somewhere in the ciftify commands?
Do I understand it righ…
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### What would you like to see added in fMRIPrep?
I was reading [Jeganathan et al. (preprint)](https://doi.org/10.1101/2024.07.09.602799), and it seems like the `onavg` surface space would be prefe…
tsalo updated
2 months ago