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Dear Daehwankimlab
I'm using tophat2 (v.2.1.0) and tophat-fusion for circularRNA detection by circexplorer2 pipeline.
tophat2 alignment ran well, but the problem lies in tophat-fusion, it gives the …
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Hi egaffo, thanks for the prompt reply. I tried the new docker but I keep having a similar error:
user@NGS:~/CirComPara$ sudo docker run -u `id -u` --rm -it -v $(pwd):/data egaffo/circompara2:v0.…
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Taka reported:
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I still have a bit of problem understanding count_matrix_with_annotations.txt. Is this combining all BSJs (back-splice junctions) detected, or only “known” BSJs are included? if you…
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Hi,
I have been using circRNAprofiler to perform downstream analysis on output data from CIRCExplorer2.
I have been able to work with the full pipeline as showed on [Bioconductor](https://www.bi…