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This is a question I get asked often and I am offering an explanation here.
I've been asked a few times about why this package is not on CRAN. And the answer is simply that the package contains win…
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Hi ipyrad team, thanks for all the tools! I am trying out the PCA cookbook but hit this error at the 'Run PCA and plot results' step:
AttributeError Traceback (most recent…
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I have run `admixturePipeline.py`, `submitClumpak.py`, and `distructRerun.py` in a dedicated directory. All seem to have worked OK.
Now I want to run `submitClumpak.py -b` but I am getting the fol…
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Hello, thanks for the very nice package.
Could it be possible to extract the confidence intervals when running STRUCTURE ? It corresponds to the "credible regions" in the parameters.
Thanks a lot.…
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Hi, pophelper is a great package. One thing that would be really useful would be the ability to plot MCMC samples to assess convergence. Some other packages are designed to do this (Starmie, Rrunstruc…
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Hi!
I intend to run STRUCTURE as implemented in ipyrad. I am currently working on a conda environment, using mamba to install the packages, and working on python 3.5.5. I have managed to install ev…
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Dear my colleagues,
May I have a question ?
How to save bar data of Structure analysis as csv ? A right click does not work on jupyter notebook.
A shift key with right click does not also work. …
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I'm running Structure from ipyrad analysis on jupyter (v 4.6.1) notebook (v 5.7.10) on Mac OSX (10.14.6). I've gotten Structure to work multiple times in the past on the same machine, but for some rea…
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Hi Aaron,
Pong is great in its user-friendly interface and has some excellent options. However, sometimes I need more customisation options and would like to generate more elaborate plots in, e.g.…
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(base) [XXX admixturePipeline]$ ./distructRerun.py -a example_admixturePipeline_result/ -d example_files/1516030453 -k 1 -K 2
example_files/1516030453/AdmixturePopIdToPopName Exists
example_files/15…