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Hi!
I'm doing a project to do Differential gene expression on non-coding RNAs, so was planning to filter counts file only for non-coding probability.
But for that to happen, I'd need the read i…
idlip updated
2 weeks ago
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The Biological Roles of microRNAs in Drosophila Development
PMID: 39057224
Check annotation of miRNAs mentioned have been curated and potential template for GO-CAMs for general processing
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**What is this request referring to?**
GO has a grouping term for regulatory non-coding RNAs: lnc, miRNA, piRNA, siRNA
Would SO consider creating an equivalent term?
**What is the name you would…
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Hello!
I have been using TOGA lately for transferring hg38 gene annotations to a newly constructed genome and it looks good so far! However, I do notice that annotations for non-coding RNAs such as…
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**long non-coding RNA**: I used definition from wikipedia: Long non-coding RNAs (long ncRNAs, lncRNA) are non-protein coding transcripts longer than 200 nucleotides.
Alternative term: lncRNA
Parent: …
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Indeed, this is not an issue with RNAcentral, rather I need help with some intuition please
We have exosome-sequensing (from plasma). In raw read counts file, I see 72650 gene names
This is hoe …
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- [ ] Low hanging fruit: difference in length distributions (compare with human, mouse, amphioxus non-mapping transcripts)
- [ ] Folding structure for mapping vs non-mapping RNAs (or better, putative …
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In concert with with miRNA/transcription working groups.
- [ ] Terms to describe molecular functions of lncRNAs (see GO ontology tracker)
Review all long non-coding RNAs in D.mel and annotate
- […
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### Team Name:
qnyble
### Project Description:
RNAs are nucleotide polymers fundamental to a diversity of elementary biological functions, including the (de)coding and regulation of genes, …
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**What is the SO term name and accession?**
SO:0001877 lncRNA
non-coding RNA generally longer than 200 nucleotides that cannot be classified as any other ncRNA subtype.
**Describe what you …