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https://www.commonwl.org
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Hello! This is a very interesting project. In case you haven't seen it, there's a project called [Common Workflow Language (CWL)](http://www.commonwl.org/) that attempts to create a single document sp…
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We could provide a visual rendering of process Application Package and workflows using these tools.
Directly with `cwltool`!
https://github.com/common-workflow-language/cwltool/commit/cbc33f3ee9…
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as per
https://github.com/common-workflow-language/common-workflow-language
1h to get started
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Create CommonWL "tool" interfaces for each CNVkit sub-command. Try to use these to improve integration with Galaxy and bcbio-nextgen.
Maybe wrap "batch" as a workflow instead of a tool -- not sure ho…
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See https://github.com/common-workflow-language/common-workflow-language/issues/104
Tasks: produce Galaxy workflow following the instructions at https://github.com/nekrut/galaxy/wiki/Reference-based-…
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The extensions can be found here:
* https://github.com/common-workflow-language/cwltool/blob/main/cwltool/extensions.yml
* https://github.com/common-workflow-language/cwltool/blob/main/cwltool/exten…
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**Describe the bug**
Linux quick start instructions working, but may have issues on Mac.
Take a look and see if reproducible
If it helps, the Ubuntu command-history and versions that worked were
``…
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Having multiple sidecars for multiple backend is fantastic, and kubernetes provides a detailed standard to which they will all do their best to adhere.
Unfortunately, some "special usecase" for ou…
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Examples: https://github.com/common-workflow-language/common-workflow-language/blob/master/v1.0/conformance_test_v1.0.yaml
https://github.com/common-workflow-language/user_guide/blob/gh-pages/_incl…
mr-c updated
4 months ago