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We tried running the SOAPdenovo_array.sh script using 30 .fq files of total size 557GB as input and a reference genome with a total size of approximately 17GB.
The SOAPdenovo_array.sh script requires…
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Hi, Thanks for a cool tool
I am struggling to use it in computing clusters
I uploaded tar.gz and opened it with the following command:
> tar -xzvf v1.1.tar.gz
I tried to use via:
> java -Xmx…
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We are building supercomputing infra for an internal GPU cluster up to thousands of expensive GPUs.
We are looking to adopt mpi-operator, or slurm.
slurm is widely adopted in large-scale hpc compu…
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Hello,
I am pretty new to running ML algorithms, and I was wondering what the optimal # of CPUs, GPUs, or nodes would be. Thanks!
Best,
Heidi
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I think there is a issue computing the running nodes at lines: https://github.com/severalnines/galera-docker-mariadb/blob/master/entrypoint.sh#L250#L256 . The test should be done on the running_nodes3…
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I'd like to see an MPI Island class for cluster computing whereby islands can run and migrate on several machines to perform one optimization problem. This capability existed in Pagmo1x but does not y…
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CellRank2 is great, but when I use the RealTimeKernel, I found very limited visualization functions for me to visualize my computing transition matrix. There were only RandomWalk and "single" f…
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https://kuboard.cn/guide/cluster/computing.html
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I'm writing this system to scale the analysis of DNA sequencing and I'm building it with Plumbum, Celery and EC2. Since the majority of DNA sequencing analysis is accomplished through pipelining man…
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**What would you like to be added/modified:**
1. Deploy the edge components of KubeEdge on nodes in a emulated or physical MANET network, and deploy the cloud components of KubeEdge outside of MANET…