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In [cooccurrence_entries.py](https://github.com/pengyan510/nlp-paper-implementation/blob/master/glove/src/cooccurrence_entries.py), line 65 `cooccurr_counts[(self.vectorized_corpus[i], self.vectorized…
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In python 3 dict.keys() returns a dict_keys object and dict_values a dict_values object instead of an array.
So in glove.py line 165 should be changed from:
`word_ids = np.array(cooccurrence.keys(…
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Hi DIllon,
I noticed in the cooccurrence_matrices/absolute path that one of the variants has a SNP that is not listed in the mutations.tsv file: specifically , the location is correct but the nucleo…
ibseq updated
2 years ago
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I'm seeing an issue with the counting of results from sources when using inferred mode. with this query, I was getting 3 results. if you need more info please let me know, I'm happy to provide.
her…
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### Describe the bug
Some nodes that are present in the edge file for co-occurrence data are not present in the nodes TSV file. (Note that co-occurrence data are not included in the merged graph we…
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Is it possible to have relation data in one GraphML to avoid further merging? Like:
```xml
5
siblings
```
Either inside `/corpora/{corpusname}/play/{playname}/networkdata/graphml` command…
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When I tried the demo on MacOS, it stopped with an error "Running ModularityOptimizer for clustering ...Unable to perform assignment with 0 elements on the right-hand side." after successfully computi…
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`$ build/cooccur -memory 4.0 -vocab-file vocab.txt -verbose 2 -window-size 15 < ./train_data/data.txt > cooccurrence.bin
COUNTING COOCCURRENCES
window size: 15
context: symmetric
max product: 1375…
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**Describe the bug**
There's a publication in [EuroPMC](https://europepmc.org/article/MED/35101074), with this sentence in the abstract:
```
We report two cases: one girl suffering from typical…
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I am getting the following message on my ubuntu 14.04 -
5877 Segmentation fault (core dumped) $BUILDDIR/shuffle -memory $MEMORY -verbose $VERBOSE < $COOCCURRENCE_FILE > $COOCCURRENCE_SHUF_FILE