Knowledge-Graph-Hub kg-covid-19 issues

Knowledge-Graph-Hub / kg-covid-19

An instance of KG Hub to produce a knowledge graph for COVID-19 response.

https://github.com/Knowledge-Graph-Hub/kg-covid-19/wiki

BSD 3-Clause "New" or "Revised" License

78 stars 26 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Cached inputs are incongruent with what STRING transformer expects -> FileNotFoundError

#473 caufieldjh opened 11 months ago
1
Addressing errors in tokenizing input data

#472 caufieldjh closed 11 months ago
2
Bump bioregistry

#471 caufieldjh closed 1 year ago
2
Transform fails due to ImportError

#470 caufieldjh closed 1 year ago
0
Merge fails due to error tokenizing data

#469 caufieldjh closed 11 months ago
2
Bump markdown-it-py from 2.1.0 to 2.2.0

#468 dependabot[bot] opened 1 year ago
0
Bump ipython from 8.7.0 to 8.10.0

#467 dependabot[bot] opened 1 year ago
0
Bump pywin32 from 227 to 301

#466 dependabot[bot] closed 1 year ago
0
Graph refresh: dependencies, Poetry, workflows, and cleanup

#465 caufieldjh closed 1 year ago
1
Verify single SOT for NCBI Taxon class relationships

#464 caufieldjh opened 1 year ago
0
Check on ingested CL terms and verify CP terms are not included

#463 caufieldjh opened 1 year ago
0
Knowledge source on edges is unclear

#462 caufieldjh opened 1 year ago
0
Update `OntologyClass` node categories

#461 caufieldjh opened 1 year ago
0
Resolve duplicated edge categories

#460 caufieldjh opened 1 year ago
0
Compressed graph incorrectly includes relative local path

#459 caufieldjh opened 1 year ago
0
404 error on chembl_28_molecule data

#458 caufieldjh opened 2 years ago
0
GPI 1.2 file format error in one line for uniprot_sars-cov-2.gpi

#457 kltm closed 2 years ago
2
Jenkins build fails after merge with JSONDecodeError

#456 caufieldjh closed 2 years ago
1
update to ensmallen so pip install . works on fresh virtual environment

#455 sierra-moxon opened 2 years ago
0
Track memory usage during build

#454 caufieldjh opened 2 years ago
0
Remove the top-level HTML index refresh in Jenkinsfile

#453 caufieldjh closed 2 years ago
1
Bump `kgx` to 1.5.6

#452 caufieldjh closed 1 year ago
1
Need to call multi_indexer directly

#451 caufieldjh closed 2 years ago
1
Update reqs and Jenkins for multi-indexer

#450 caufieldjh closed 2 years ago
1
Add kghub downloader - test on Jenkins

#449 caufieldjh closed 2 years ago
2
Update to use kghub-downloader

#448 caufieldjh closed 2 years ago
1
Re-add ssh-keyscan

#447 caufieldjh closed 2 years ago
1
Better dependency fix re: Linkml

#446 caufieldjh closed 2 years ago
1
Fixing dependency conflict

#445 caufieldjh closed 2 years ago
2
Builds fail due to dependency conflict

#444 caufieldjh closed 2 years ago
0
Update URLs in download.yaml

#443 caufieldjh closed 2 years ago
0
Remove previous SSH config for pan

#442 caufieldjh closed 2 years ago
0
Rust/Cargo error causing ensmallen_graph package install to fail

#441 chuck-rosalind closed 2 years ago
5
Update uniprot_sars-cov-2.gpi

#440 kltm closed 2 years ago
2
Jenkins build failing in Blazegraph deploy stage

#439 justaddcoffee closed 2 years ago
8
Normalizing drug prefixes to DrugCentral

#438 caufieldjh closed 2 years ago
4
Normalize Drug nodes to single prefix

#437 caufieldjh closed 2 years ago
0
Update TCRD / DrugCentral version

#436 caufieldjh closed 2 years ago
1
Classifier

#435 shainaraza closed 2 years ago
4
Move KGX pin to 1.5.1

#434 justaddcoffee closed 2 years ago
1
Install KGX from Deepak's branch

#433 justaddcoffee closed 2 years ago
1
Add cleanws to post stage in Jenkinsfile

#432 justaddcoffee closed 2 years ago
0
Jenkins hanging while writing blazegraph journal from NT file

#431 justaddcoffee closed 2 years ago
9
Fix hang issue when writing blazegraph journal

#430 justaddcoffee closed 2 years ago
2
Add -f to pigz command in Jenkinsfile

#429 justaddcoffee closed 2 years ago
0
Force pigz to prevent iotcl error

#428 justaddcoffee closed 2 years ago
0
Add grlc queries to docs

#427 justaddcoffee closed 2 years ago
1
Check for existing file before pigz unzipping file

#426 justaddcoffee closed 2 years ago
0
Refine scibite biolink edge type

#425 justaddcoffee closed 2 years ago
1
Add sphinx documentation

#424 justaddcoffee closed 2 years ago
1