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Hi, very nice tool - well done! Any plans for supporting cram files? It looked like you are using `samtools` for handling alignments, but one would then presumably need to pass along a reference genom…
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## Expected Behavior
I'm not sure... Low hanging fruit: a warning saying "CRAM tests skipped, `sh` cannot be found in the path."
## Actual Behavior
```
Internal error, please report upstream i…
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### Deployment Type
Self-hosted
### NetBox Version
v4.1.1
### Python Version
3.11
### Steps to Reproduce
1. Create a prefix (any family, any value)
2. Open newly created prefix …
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## :rocket: Feature Request
### Checklist
- [x] No duplicate issues/PRs
- [x] Are you running the latest `downgrade` release from the [AUR](https://aur.archlinux.org/packages/downgrade/)?
##…
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Hi,
I used a cram file generated by samtools sort and fixmate, to run clip_consensus_builder, the command look like this:
"~/miniconda3/envs/insurveyor-env/bin/clip_consensus_builder HGDP00092.alt_…
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### Package name
cram
### Package version
Newest
### Package website
Website: https://bitheap.org/cram/
Github: https://github.com/aiiie/cram
### Package availability
Pypi: https://pypi.org/pr…
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samtools announced that their current version is the last version that will only output CRAM 3.0, next versions will be CRAM 3.1. We should test that we can accomodate 3.1 files
See "This is the la…
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**Describe the Bug**
Compiling fails due to errors in `cram-apple-clang.s
**To Reproduce**
```
gh repo clone pyne/pyne
cd pyne
python setup.py install --user
```
output:
```
opt/homeb…
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### The problem
When setting up a Generic Thermostat as a Helper there is the Minimum cycle duration setting at the bottom:
![image](https://github.com/user-attachments/assets/b671acc0-55bd-43b4…
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It would be nice to either swap to CRAM files, or offer that as an option.