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I've looked at the implementation of the [example of dirac production](https://gitlab.cta-observatory.org/cta-computing/dpps/workload/cwl_dev/-/blob/main/testProdDefinitions.py) into [CWL](https://git…
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See https://gitlab.com/i5k_Workspace/workspace_roadmap/-/wikis/Adding-an-organism-CWL-update for full description of each task (requires gitlab login)
- assembly accession number: GCF_040417275.1
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- [ ] bowtie.cwl
- [x] bcftools_stats
- [x] bcftools_annotate
- [x] CollectQualityYieldMetrics.cwl
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`run_ogc_application_package`
## Context
For the InterTwin project (and soon others), we would like to run an OGC Application Package inside an openEO process graph. The documentation for OGC Appl…
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**Snakemake version**
7.7.0
**Describe the bug**
Running `snakemake --export-cwl example.cwl` prints `AttributeError: 'Job' object has no attribute 'conda_env_file'`
**Logs**
```
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Hey all,
Congratulations on your 1.0 release!
It would be super if you could donate your CWL CommandLineTool descriptions to https://github.com/common-workflow-library/bio-cwl-tools where we the…
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Target date: 2nd week of November, 2023
Yesterday I told @cbielow that I would volunteer to be the release manager for the next release
https://github.com/OpenMS/OpenMS/wiki/Preparation-of-a-new…
mr-c updated
2 months ago
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We are looking into ways to integrate EO Application packages (CWL) into openEO.
Our latest ideas are formulated here: https://github.com/Open-EO/openeo-processes/issues/507#issuecomment-2236310553
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See https://gitlab.com/i5k_Workspace/workspace_roadmap/-/wikis/Adding-an-organism-CWL-update for full description of each task (requires gitlab login)
- assembly accession number: GCF_037126465.1
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# OGS remapping and manual annotations
- [ ] request whole-genome alignment
- [ ] Set up data directories and get data
- [ ] run remap-gff3
# Change old content
- [ ] back up and deprecate ol…