issues
search
mskcc
/
ACCESS-Pipeline
cfDNA Sequencing Pipeline with UMI
MIT License
9
stars
3
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Bump certifi from 2019.3.9 to 2022.12.7
#262
dependabot[bot]
opened
1 year ago
0
Bump pillow from 3.4.2 to 9.3.0
#261
dependabot[bot]
opened
1 year ago
0
Bump joblib from 0.13.2 to 1.2.0
#260
dependabot[bot]
opened
1 year ago
0
Bump codecov from 2.0.15 to 2.0.16
#259
dependabot[bot]
opened
2 years ago
0
Bump openpyxl from 1.8.6 to 2.4.2
#258
dependabot[bot]
opened
2 years ago
0
Bump reportlab from 3.3.0 to 3.5.55
#257
dependabot[bot]
opened
2 years ago
0
Bump numpy from 1.16.1 to 1.22.0
#256
dependabot[bot]
opened
2 years ago
0
Bump pypdf2 from 1.26.0 to 1.27.5
#255
dependabot[bot]
opened
2 years ago
0
Bump pillow from 3.4.2 to 9.0.1
#254
dependabot[bot]
closed
1 year ago
1
Bump pillow from 3.4.2 to 9.0.0
#253
dependabot[bot]
closed
2 years ago
1
Update gbcms_params.yaml
#252
allanbolipata
closed
2 years ago
0
Ij/complex genotyping
#251
ionox0
opened
3 years ago
0
Dmp prod/feature/complex variants
#250
ionox0
opened
3 years ago
0
Bump pillow from 3.4.2 to 8.3.2
#249
dependabot[bot]
closed
2 years ago
1
remove --rm-dups argument
#248
ionox0
opened
3 years ago
0
Bump pillow from 3.4.2 to 8.2.0
#247
dependabot[bot]
closed
3 years ago
1
Sample sheet workflow
#246
aef-
opened
3 years ago
1
Donate CWL tool descriptions to community repo?
#245
mr-c
opened
3 years ago
2
Bump pillow from 3.4.2 to 8.1.1
#244
dependabot[bot]
closed
3 years ago
1
Update vardict_paired.cwl
#243
aef-
opened
3 years ago
0
Bump pillow from 3.4.2 to 7.1.0
#242
dependabot[bot]
closed
3 years ago
1
Python3 updates
#241
aef-
closed
3 years ago
0
Beagle Updates
#240
ionox0
closed
3 years ago
0
Fix seek error when combining PDFs during QC
#239
aef-
closed
3 years ago
1
Environment issues when building python_tools
#238
aef-
opened
4 years ago
0
textplot library missing
#237
ionox0
opened
4 years ago
0
TERT promoter mutations not able to be tagged through tag_hotspots
#236
ionox0
opened
4 years ago
1
vardict not giving variants
#235
ionox0
opened
4 years ago
0
SV module missing file exception
#234
ionox0
opened
4 years ago
0
make tag_hotspots compatible with python3
#233
ionox0
opened
4 years ago
0
missing Library_input and Library_yield from QC title page after recent merge
#232
ionox0
closed
4 years ago
9
stricter validation for generate_access_variants_inputs
#231
ionox0
opened
4 years ago
1
title file all female (F) makes FALSE in qc report
#230
ionox0
opened
4 years ago
0
TOIL_LSF_ARGS has become a required environment variable
#229
ionox0
opened
4 years ago
0
Merging of generate_access_variants_inputs.py script
#228
rhshah
opened
4 years ago
0
Premature termination failure
#227
ionox0
opened
4 years ago
0
Use IGO_ID instead of Collab_ID for creating title file / finding fastqs
#226
ionox0
opened
4 years ago
0
CNV inputs generation script should use absolute paths
#225
ionox0
opened
4 years ago
0
Remove stdout / stderr redirection from CNV workflow steps
#224
ionox0
opened
4 years ago
0
1.3.26 plot module insert sizes plot samples duplicated
#223
ionox0
closed
4 years ago
4
New fix to 2x2 rule
#222
maysunh
closed
4 years ago
0
Fix 2x2 rule
#221
maysunh
closed
4 years ago
0
need to include CNV requirements in setup.sh
#220
ionox0
closed
4 years ago
1
pipeline_submit: CNV workflow
#219
rhshah
closed
4 years ago
0
plots_module.r does not support quotes in title file
#218
ionox0
closed
4 years ago
1
Bump pillow from 3.4.2 to 6.2.0
#217
dependabot[bot]
closed
3 years ago
1
While testing please remove this parameter.
#216
rhshah
closed
4 years ago
1
finished job gets logged repeatedly in debug mode
#215
ionox0
opened
4 years ago
0
pull fingerprinting hotfix from DMP
#214
ionox0
closed
4 years ago
0
WIP initial ACCESS project creation script
#213
ionox0
closed
4 years ago
0
Next