mskcc ACCESS-Pipeline issues

mskcc / ACCESS-Pipeline

cfDNA Sequencing Pipeline with UMI

MIT License

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issues

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Bump certifi from 2019.3.9 to 2022.12.7

#262 dependabot[bot] opened 1 year ago
0
Bump pillow from 3.4.2 to 9.3.0

#261 dependabot[bot] opened 1 year ago
0
Bump joblib from 0.13.2 to 1.2.0

#260 dependabot[bot] opened 1 year ago
0
Bump codecov from 2.0.15 to 2.0.16

#259 dependabot[bot] opened 2 years ago
0
Bump openpyxl from 1.8.6 to 2.4.2

#258 dependabot[bot] opened 2 years ago
0
Bump reportlab from 3.3.0 to 3.5.55

#257 dependabot[bot] opened 2 years ago
0
Bump numpy from 1.16.1 to 1.22.0

#256 dependabot[bot] opened 2 years ago
0
Bump pypdf2 from 1.26.0 to 1.27.5

#255 dependabot[bot] opened 2 years ago
0
Bump pillow from 3.4.2 to 9.0.1

#254 dependabot[bot] closed 1 year ago
1
Bump pillow from 3.4.2 to 9.0.0

#253 dependabot[bot] closed 2 years ago
1
Update gbcms_params.yaml

#252 allanbolipata closed 2 years ago
0
Ij/complex genotyping

#251 ionox0 opened 3 years ago
0
Dmp prod/feature/complex variants

#250 ionox0 opened 3 years ago
0
Bump pillow from 3.4.2 to 8.3.2

#249 dependabot[bot] closed 2 years ago
1
remove --rm-dups argument

#248 ionox0 opened 3 years ago
0
Bump pillow from 3.4.2 to 8.2.0

#247 dependabot[bot] closed 3 years ago
1
Sample sheet workflow

#246 aef- opened 3 years ago
1
Donate CWL tool descriptions to community repo?

#245 mr-c opened 3 years ago
2
Bump pillow from 3.4.2 to 8.1.1

#244 dependabot[bot] closed 3 years ago
1
Update vardict_paired.cwl

#243 aef- opened 3 years ago
0
Bump pillow from 3.4.2 to 7.1.0

#242 dependabot[bot] closed 3 years ago
1
Python3 updates

#241 aef- closed 3 years ago
0
Beagle Updates

#240 ionox0 closed 3 years ago
0
Fix seek error when combining PDFs during QC

#239 aef- closed 3 years ago
1
Environment issues when building python_tools

#238 aef- opened 4 years ago
0
textplot library missing

#237 ionox0 opened 4 years ago
0
TERT promoter mutations not able to be tagged through tag_hotspots

#236 ionox0 opened 4 years ago
1
vardict not giving variants

#235 ionox0 opened 4 years ago
0
SV module missing file exception

#234 ionox0 opened 4 years ago
0
make tag_hotspots compatible with python3

#233 ionox0 opened 4 years ago
0
missing Library_input and Library_yield from QC title page after recent merge

#232 ionox0 closed 4 years ago
9
stricter validation for generate_access_variants_inputs

#231 ionox0 opened 4 years ago
1
title file all female (F) makes FALSE in qc report

#230 ionox0 opened 4 years ago
0
TOIL_LSF_ARGS has become a required environment variable

#229 ionox0 opened 4 years ago
0
Merging of generate_access_variants_inputs.py script

#228 rhshah opened 4 years ago
0
Premature termination failure

#227 ionox0 opened 4 years ago
0
Use IGO_ID instead of Collab_ID for creating title file / finding fastqs

#226 ionox0 opened 4 years ago
0
CNV inputs generation script should use absolute paths

#225 ionox0 opened 4 years ago
0
Remove stdout / stderr redirection from CNV workflow steps

#224 ionox0 opened 4 years ago
0
1.3.26 plot module insert sizes plot samples duplicated

#223 ionox0 closed 4 years ago
4
New fix to 2x2 rule

#222 maysunh closed 4 years ago
0
Fix 2x2 rule

#221 maysunh closed 4 years ago
0
need to include CNV requirements in setup.sh

#220 ionox0 closed 4 years ago
1
pipeline_submit: CNV workflow

#219 rhshah closed 4 years ago
0
plots_module.r does not support quotes in title file

#218 ionox0 closed 4 years ago
1
Bump pillow from 3.4.2 to 6.2.0

#217 dependabot[bot] closed 3 years ago
1
While testing please remove this parameter.

#216 rhshah closed 4 years ago
1
finished job gets logged repeatedly in debug mode

#215 ionox0 opened 4 years ago
0
pull fingerprinting hotfix from DMP

#214 ionox0 closed 4 years ago
0
WIP initial ACCESS project creation script

#213 ionox0 closed 4 years ago
0