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https://www.biorxiv.org/content/10.1101/2024.06.06.597812v1
https://github.com/lahammond/RESPAN
Accurate and unbiased reconstructions of neuronal morphology, including quantification of dendriti…
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Please check that the term does not already exist by using the ontology search tool OLS:
https://www.ebi.ac.uk/ols4/ontologies/cl
**cell label:**
spiny VIP neuron
**Text definition:**
A vip G…
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We need to implement a draft of the final workflow as follows:
- User loads a tif image. Can be single image or 3d volume. Needs to include multiple color channels.
- This image should have an emp…
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## Introduction
- [x] We reconstructed 1500 um^3 of neocortical tissue
- [ ] Make a graph!
## RESULTS.VAST
- [x] In 500 um^3 cylinder, no axonal or dendritic orphans, 568 spines and 601 terminal axon…
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Hi there,
I was playing with it by using the data from https://figshare.com/articles/
Labeled_Dendritic_Spines_-_Training_Data/6149207, but I do not know how to do next after loading the images. I…
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Currently, the way we randomize 3D points may be too random since dendritic spines do have biological clustering mechanisms. I just want to look at whether the treatment alters the **degree** of clust…
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This issue concerns a closed PR: https://github.com/BlueBrain/MorphIO/pull/321
There should be no Mitochondria and no Endoplasmic Reticulum object attached to Dendritic Spine. But they exist becaus…
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# features represent a whole neuron
- [x] arbor density 5d39fb98fd4585b286e02a0ad004066dbea0c9a2
- [x] total path length
- [x] total frustum-based surface 4d9df088ecd238334eeda6a95c6d0b0153cc4ee…
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I think it would be much more useful if we changed the terms and logical definitions of cytoplasmic sides of membranes to be cytosolic sides of membranes. We need to examine if this would cause any pr…
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If they only had 14 neurons, how many were inhibitory? Doesn't that effect results?