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It'd be really great to add latex equations to all of the alpha diversity measures.
I added a few equations with my initial alpha diversity pull request but didn't get to a majority of them.
Here ar…
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Hello,
I am interested in using divnet-rs to calculate beta diversity measures and ideally then using them in the DivNet function testBetaDiversity() to test for significance. I saw the earlier pos…
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### Description
Issue to track progress of diversity optimization implementation in pyribs.
General:
- [x] Modify the scheduler API to support diversity optimization -> #473
- [ ] Add tu…
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Hi. I'm currently using your package for an optimization problem.
Since I needed to easily track iterations of the algorithm to extract some measures (such as diversity of the sampled solutions at ea…
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Hi, Could you please suggest why do we use alpha (Padj) 0.7 in alpha diversity, I generally work on RNAseq and always use alpha 0.05. could you please suggest how it affect the alpha diversity measur…
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Hello in your tutorial, you said "Alpha diversity measures the diversity within a single sample and is generally based on the number and **relative** abundance of taxa at some rank (e.g. species or OT…
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Hi,
I am trying to run the `plot_anova_diversity` function but it produces an error:
```
plot_anova_diversity(physeq1, method = "shannon", grouping_column = "Type")
Error in names(df_pw)
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Hello,
I'm using the plot_richness function to create alpha diversity boxplots. How might I re-name the alpha diversity measures in the facets produced by the function? E.g., I want to re-title "O…
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Typo:
>Making your conference inclusive and encouraging diversity is a breeze! Just follow the measures below. ~The~ They are explained in more depth in the other pages of this Cookbook.
I also…
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Include an rmd template where you would get richness and diversity measures some plots a list of species maybe add later a possibility for map