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Place under the `viz` module a reportlet generation tool, based on the comments here https://github.com/nipreps/dmriprep/pull/144#discussion_r561782596
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# dMRIPrep - A robust and reproducible pipeline for dMRI data pre-processing
***By Michael Joseph, The Centre for Addiction and Mental Health, Toronto, Canada***
- Theme: Open Workflows
- Format: Lig…
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Hi,
I used dmriprep 0.5.7 with slice check, interlace check, susceptibility correction, eddy motion correction, brain tractography, image filter (b = 1600) and DTI estimate to run subjects. Then in…
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* dmriprep version: 0.5.0
* Python version:
* Operating System:
### Description
With the latest docker image, run gets completed with no errors. But no output dwi directory gets created and h…
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* dmriprep version: 0.5.0rc0
* Operating System: Linux
### Description
I ran dmriprep on Phillips data using the following dMRIPREP command,
dmriprep /work /output participant --particip…
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Right now this tool is amazing for
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I have a dataset with 2 preprocessed diffusion sequences, one single and one multishell (3 bvals).
Although both are included in the dwiqc.json file produced by qsiprep, only the singleshell sequ…
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With the development of #91, it has become clear that we don't want to be fitting models in background pixels, nor have the background be considered by the cost function of ANTs.
Therefore, eddymot…
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Add the suggestions from https://neurostars.org/t/dmriprep-an-fmriprep-for-diffusion/2385/8 to the QC report
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@oesteban @feilong @mgxd @HippocampusGirl Here is a single-shot resampler that accepts an original BOLD series and an fMRIPrep output directory.
Parts of this are cut-and-pasted from various places…