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@BoPeng we are recently looking into UKB data for some traits we analyze,
https://dnanexus.gitbook.io/uk-biobank-rap/science-corner/guide-to-analyzing-large-sample-sets
the new UKB release is o…
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Perhaps GLNexus should be replaced. No work has been done the last two years, with open issues like assigning `0/0` when it should be `./.` (https://github.com/dnanexus-rnd/GLnexus/issues/286), which …
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Hello,
I wanted to report a possible issue that I can't quite nail down. The issue is both complex and limited to a very specific use-case within the UKBiobank platform supplied by DNANexus. It req…
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https://platform.dnanexus.com/
@iskandr says that dalliance and igv.js are there.
danvk updated
9 years ago
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Hello,
We would need following 2 apps from DNA nexus to be converted to Cluster compatible:
drop_relateds
vcf_pca
Thanks!
Shefali
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My system is running with these libraries in my `.toml` that supports read/write files, based on `fsspec` in Python.
`fsspec_dnanexus = ">=0.2.3"`
`s3fs = "== 2024.3.1"`
`adlfs = "== 2024.4.0"`
`x…
nct74 updated
3 months ago
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Hi,
I was trying to run parliament2 using docker but I get the following error:
docker run -v $ALIGNMENTS -v $PARLIAMENT_OUT dnanexus/parliament2:v0.1.11-0-gb492db6d --bam C-G0-S1.sorted.bam --ba…
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The nirvana app failed on a FH sample (https://platform.dnanexus.com/projects/G54xF184yK0xZVvq5K99G8Ff/monitor/job/G54z8FQ4yK0k48804k6351v4)
```
/home/dnanexus/dotnet/sdk/2.2.207/NuGet.targets(504…
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While trying to upload small text file, in uploading-files-basic example, it fails with 403 error.
How to reproduce:
1. Clone project
2. Set projectid and authtoken inside index.html in uploading…
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We want to make PharmCAT easily available on cloud genomics analysis platforms. We already publish a Docker image to Docker Hub so it should be relatively easy to make that image available to differen…