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PharmGKB
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PharmCAT
The Pharmacogenomic Clinical Annotation Tool
Mozilla Public License 2.0
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Document genes that shouldn't be set to reference
#193
markwoon
opened
1 day ago
2
Feature request to bypass BadOutsideCallException for bad outside call
#192
songx
closed
6 days ago
7
HAPB3 calling
#191
diegomd90
closed
6 days ago
2
UnexpectedStateException: Multiple phenotypes for gene CYP2D6
#190
fmobegi
closed
6 days ago
6
Calling CYP2D6 as *4/*4 instead of *4+*10/*4+*10
#189
msilver727
closed
2 weeks ago
2
Publish to cloud tooling providers like Dockstore, AnVIL, etc
#188
whaleyr
opened
1 month ago
0
PMID null in Pharmcat json report
#187
soniafont
closed
6 days ago
1
HL7 support
#186
markwoon
opened
1 month ago
2
Support for CPIC level C drugs
#185
Bioinf-usr
closed
2 months ago
1
Duplicated CYP2D6 diplotypes in matcher JSONs
#184
BinglanLi
opened
2 months ago
0
Capture homozygous reference INDELs based on individual positions
#182
BinglanLi
opened
4 months ago
2
Build docker image for arm64
#181
whaleyr
closed
4 months ago
0
ExecutionException due to UnexpectedStateException: Multiple Phenotypes for Gene CYP2C9
#180
ngslabex
opened
4 months ago
11
PharmCAT Telemetry
#179
markwoon
opened
4 months ago
0
Support multiple outside call files
#178
whaleyr
closed
4 months ago
1
Support for various array data in tabular (CSV/TSV/XLSX) format
#177
whaleyr
opened
5 months ago
0
Error running on Pharmacoscan data
#176
anh151
closed
5 months ago
1
Phased variants in multiple phase blocks produces Unknown/Unknown and/or other bugs.
#175
holtjma
opened
5 months ago
0
Recognizing as gVCF a standard VCF file
#174
inti4digbi
closed
5 months ago
4
Discarded genotypes in report - reopen #128
#173
krukanna
closed
6 months ago
1
OA and CNV Data from QuantStudio 12K Flex
#172
Estefany2081
opened
6 months ago
5
CYP2D6 diplotypes with activity score `≥3.75` are not correctly annotated in CPIC JSON data resource
#171
kuanyili
closed
6 months ago
10
docs: escape asterisks in star alleles
#170
kuanyili
closed
6 months ago
1
docs: fix broken links
#169
kuanyili
closed
7 months ago
2
AD Format
#168
JCBNim
closed
7 months ago
3
PharmCAT Annotation Error -- Triploid Genotypes
#167
pbrennan-mvz
opened
8 months ago
2
HLA Data appearing as N/A instead of positive or negative
#166
Shreyaack
closed
6 months ago
9
Issue with BGZIP, running pharmcat_pipeline on VCF Files
#165
JC-Delmas
closed
6 months ago
2
Warfarin Workflow Discrepancy
#164
Shreyaack
closed
9 months ago
1
Add warning to summary table
#163
katrinsangkuhl
opened
9 months ago
0
Different genotypes for multiple genes
#162
nbiesot
closed
9 months ago
3
CFTR outside calls diplotype
#161
Bioinf-usr
closed
4 months ago
3
Vcf preprocessor script
#160
diegomd90
closed
9 months ago
3
Error parsing date
#159
anh151
closed
10 months ago
7
No CPIC variants found
#158
Bioinf-usr
closed
10 months ago
4
Missing CPIC version
#157
krukanna
closed
10 months ago
5
2.8.1 DPYD: java.lang.ArrayIndexOutOfBoundsException: Index 2 out of bounds for length 2
#156
hudja
closed
10 months ago
2
DPYD in 2.8.0: java.lang.IllegalStateException: STRAND MISMATCH 1
#155
hudja
closed
10 months ago
5
Outside calls error
#154
Bioinf-usr
closed
11 months ago
7
Is it possible to use exemptions.json without building from source?
#153
hudja
closed
11 months ago
2
Phasing ambiguity question
#152
anh151
closed
11 months ago
1
Parameter for outside calls in pharmcat_pipeline
#151
MarioCazalla
closed
11 months ago
1
Error-Least function gene cannot have more than 1 diplotype
#150
krukanna
closed
11 months ago
10
UGT1A1, VKORC1 - Updated version change in haplotype values
#149
snehaleela
closed
10 months ago
4
Version 2.6.0 missing on Docker Hub
#148
kuanyili
closed
11 months ago
9
parsing error: QUAL 'inf' is not a number
#147
Dafnaa
closed
11 months ago
5
Adding Genes to Pharmcat Report
#145
pbrennan-mvz
opened
1 year ago
9
G6PD - wrong function assignment for Mediterranean, Dallas, Panama, Sassari, Cagliari, Birmingham
#144
snehaleela
closed
1 year ago
3
Update Galaxy on PharmCAT release
#143
markwoon
opened
1 year ago
0
pharmcat_vcf_preprocessor.py
#142
lingyeah89658
closed
1 year ago
2
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