PharmGKB PharmCAT issues

PharmGKB / PharmCAT

The Pharmacogenomic Clinical Annotation Tool

Mozilla Public License 2.0

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issues

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Document genes that shouldn't be set to reference

#193 markwoon opened 1 day ago
2
Feature request to bypass BadOutsideCallException for bad outside call

#192 songx closed 6 days ago
7
HAPB3 calling

#191 diegomd90 closed 6 days ago
2
UnexpectedStateException: Multiple phenotypes for gene CYP2D6

#190 fmobegi closed 6 days ago
6
Calling CYP2D6 as *4/*4 instead of *4+*10/*4+*10

#189 msilver727 closed 2 weeks ago
2
Publish to cloud tooling providers like Dockstore, AnVIL, etc

#188 whaleyr opened 1 month ago
0
PMID null in Pharmcat json report

#187 soniafont closed 6 days ago
1
HL7 support

#186 markwoon opened 1 month ago
2
Support for CPIC level C drugs

#185 Bioinf-usr closed 2 months ago
1
Duplicated CYP2D6 diplotypes in matcher JSONs

#184 BinglanLi opened 2 months ago
0
Capture homozygous reference INDELs based on individual positions

#182 BinglanLi opened 4 months ago
2
Build docker image for arm64

#181 whaleyr closed 4 months ago
0
ExecutionException due to UnexpectedStateException: Multiple Phenotypes for Gene CYP2C9

#180 ngslabex opened 4 months ago
11
PharmCAT Telemetry

#179 markwoon opened 4 months ago
0
Support multiple outside call files

#178 whaleyr closed 4 months ago
1
Support for various array data in tabular (CSV/TSV/XLSX) format

#177 whaleyr opened 5 months ago
0
Error running on Pharmacoscan data

#176 anh151 closed 5 months ago
1
Phased variants in multiple phase blocks produces Unknown/Unknown and/or other bugs.

#175 holtjma opened 5 months ago
0
Recognizing as gVCF a standard VCF file

#174 inti4digbi closed 5 months ago
4
Discarded genotypes in report - reopen #128

#173 krukanna closed 6 months ago
1
OA and CNV Data from QuantStudio 12K Flex

#172 Estefany2081 opened 6 months ago
5
CYP2D6 diplotypes with activity score `≥3.75` are not correctly annotated in CPIC JSON data resource

#171 kuanyili closed 6 months ago
10
docs: escape asterisks in star alleles

#170 kuanyili closed 6 months ago
1
docs: fix broken links

#169 kuanyili closed 7 months ago
2
AD Format

#168 JCBNim closed 7 months ago
3
PharmCAT Annotation Error -- Triploid Genotypes

#167 pbrennan-mvz opened 8 months ago
2
HLA Data appearing as N/A instead of positive or negative

#166 Shreyaack closed 6 months ago
9
Issue with BGZIP, running pharmcat_pipeline on VCF Files

#165 JC-Delmas closed 6 months ago
2
Warfarin Workflow Discrepancy

#164 Shreyaack closed 9 months ago
1
Add warning to summary table

#163 katrinsangkuhl opened 9 months ago
0
Different genotypes for multiple genes

#162 nbiesot closed 9 months ago
3
CFTR outside calls diplotype

#161 Bioinf-usr closed 4 months ago
3
Vcf preprocessor script

#160 diegomd90 closed 9 months ago
3
Error parsing date

#159 anh151 closed 10 months ago
7
No CPIC variants found

#158 Bioinf-usr closed 10 months ago
4
Missing CPIC version

#157 krukanna closed 10 months ago
5
2.8.1 DPYD: java.lang.ArrayIndexOutOfBoundsException: Index 2 out of bounds for length 2

#156 hudja closed 10 months ago
2
DPYD in 2.8.0: java.lang.IllegalStateException: STRAND MISMATCH 1

#155 hudja closed 10 months ago
5
Outside calls error

#154 Bioinf-usr closed 11 months ago
7
Is it possible to use exemptions.json without building from source?

#153 hudja closed 11 months ago
2
Phasing ambiguity question

#152 anh151 closed 11 months ago
1
Parameter for outside calls in pharmcat_pipeline

#151 MarioCazalla closed 11 months ago
1
Error-Least function gene cannot have more than 1 diplotype

#150 krukanna closed 11 months ago
10
UGT1A1, VKORC1 - Updated version change in haplotype values

#149 snehaleela closed 10 months ago
4
Version 2.6.0 missing on Docker Hub

#148 kuanyili closed 11 months ago
9
parsing error: QUAL 'inf' is not a number

#147 Dafnaa closed 11 months ago
5
Adding Genes to Pharmcat Report

#145 pbrennan-mvz opened 1 year ago
9
G6PD - wrong function assignment for Mediterranean, Dallas, Panama, Sassari, Cagliari, Birmingham

#144 snehaleela closed 1 year ago
3
Update Galaxy on PharmCAT release

#143 markwoon opened 1 year ago
0
pharmcat_vcf_preprocessor.py

#142 lingyeah89658 closed 1 year ago
2