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Traceback (most recent call last):
File "data_extraction_root.py", line 51, in
main()
File "data_extraction_root.py", line 49, in main
data_extraction_root(args)
File "data_extract…
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Hi there,
and first of all, thanks for the great work, I just noticed some oddities with regard to Sepsis 3 labels
generated by
```
sepsis_data
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I got the following error while running the pre-processing scripts by `python3 -m eICU_preprocessing.run_all_preprocessing`
File "/anaconda3/envs/TPC_Proj/lib/python3.8/runpy.py", line 194, in_ru…
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Is there any existing code to extract the SOFA Score of patients from the e-ICU database?
My aim is to determine the earliest time of Sepsis onset based on Sepsis-3 criteria for patients from the e…
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### Problem
When combining databases (say MIMIC III and eICU), the names of the ID variables and the time variable depend on the order in which sources are passed to `load_concepts`. See the follow…
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Hi @jraffa , @alistairewj , @obadawi, @tompollard and all,
I am trying to interpret the meaning of intakeOutputOffset from the intakeOutput table in eICU. Per table column description in https://…
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Some callbacks rely on additional arguments depending on the database. For example, eICU does not contain reliable fluid sampling so sepsis definitions may need to be based on antibiotics alone. `sus…
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How to extract the patients of OHCA (out-of hospital cardiac arrest)? There are many diagnoses named "cardiac arrest" in eICU. But I cannot distinguish between in-hospital and out-of-hospital cardiac…
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## eICU
* eICU BMI is all zeros
* eicu po2 max accidentally coded as min?
* eicu maximum diasbp is very high OR anzics diasbp is very low
* eicu missing pao2:fio2 max ratio
## anzics
* anz…
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Hello everyone, thank you for your efforts.
By any chance, do you have plans to convert the ICU-CRD dataset (https://eicu-crd.mit.edu/)?
This dataset, published by the MIMIC team, is also widely us…