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- [x] quality score (why/how is it different from what is returned by dorado?) - hard threshold at 10 (default)
- [x] KS entropy
- [ ] fail rate
- [x] read length/aligned length/fraction aligned
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## methylation distribution on read
I want to analyze the RNA m6A modification. I selected m6A_DRACH model when dorado basecaller.
Then I use modkit for downstream analysis.
`modkit pileup $bam \
…
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Dear Binli.
First of all, I want to say that your paper and repository is contributing a lot to the development of WSI ml area. Your code implementation is much easier to understand and implement t…
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### Description
The `entropy_src` block has various registers which configure health test "thresholds" (e.g. REPCNT_THRESHOLDS, BUCKET_THRESHOLDS). Right now, the cryptolib driver leaves these at the…
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https://github.com/xjdr-alt/entropix/blob/eaaddb27f344c8c28922c7bfd0e01006645729ae/entropix/torch_sampler.py#L56-L58
This calculation computes entropy over the attention scores for each position in…
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This issues comes from a question raised by a potential GCI user: "Assuming load balancers do a fairly good job, the load at each server would be roughly the same. In those cases, couldn't GCI usage l…
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I'm approving #1943, pending a more detailed review of the statistical arguments around how to define health checks when merging several (assumedly) independent data streams. Any one with strong opi…
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We should look at how these are run. The numebrs are GB GPU memory, listing all that are > 0.6. (We could change to >0.5 as the threshold, but it does not matter).
Maybe we should enforce the thres…
t-vi updated
5 months ago
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As part of our `tofino` design, the entropy threshold signature server is going to be run in a trusted execution environment. This is a proposed feature for attestation that validators have correctly…
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So far everything has been working out of the box, so thank you for this great plugin!
**Issue:**
I'm having problems with repetition. Recognition is good, but the same sentence is repeated over a…