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fmicompbio
/
footprintR
Tools for working with single-molecule footprinting data
https://fmicompbio.github.io/footprintR/
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Enable `readModBam` to add `sequence.context`
#20
mbstadler
opened
2 days ago
0
addReadsSummary
#19
csoneson
closed
3 days ago
1
Filtering vignette
#18
csoneson
opened
4 days ago
0
addReadStats/calcReadStats
#17
csoneson
opened
4 days ago
3
Position filtering
#16
csoneson
opened
4 days ago
1
Read filtering
#15
csoneson
opened
4 days ago
0
Sample from bam
#14
mbstadler
closed
1 week ago
0
Should `getAnchorRegions` allow `ignore.strand = TRUE`?
#13
csoneson
closed
1 week ago
4
How to deal with assays without names?
#12
csoneson
closed
1 week ago
3
add a sampling mode to `readModBam`
#11
mbstadler
closed
1 week ago
1
review use of modkit
#10
mbstadler
opened
3 weeks ago
0
QC report generation
#9
mbstadler
opened
3 weeks ago
2
collect/summarize data from multiple loci
#8
mbstadler
closed
1 week ago
2
Switching from SparseMatrix to NaMatrix
#7
hpages
opened
1 month ago
5
Calc read stats multisample
#6
csoneson
closed
1 month ago
0
Add option to modify tile linewidth, change heatmap color palette
#5
csoneson
closed
1 month ago
1
Add readModBam() to extract modification probabilities directly from bam files (MM/ML tags)
#4
mbstadler
closed
1 month ago
2
Add readModkitExtract function
#3
csoneson
closed
3 months ago
0
A couple of suggestions
#2
csoneson
closed
3 months ago
2
Minor clarifications
#1
csoneson
closed
3 months ago
1