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Dear Memote Development Team,
I hope this message finds you well. I am currently working with enzyme-constrained metabolic models and was wondering if Memote supports the evaluation of these types …
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Hi, StrainDesign has worked very well for me when used on basic stoichiometric genome-scale models (e.g. iML1515). However, I am encountering problems when I try to use it on an enzyme-constrained mod…
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Hello @oftadehomid, I am still trying to use ETFL model of yeast. I find it is difficult to update the kcat for specific enzyme using the following code:
## yeast is the ETFL model
yeast.reactions.r…
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Are these the same (only difference seems to be glutamate protonation state, and the synonyms align
GO:0052654
L-leucine transaminase activity
2-oxoglutarate + L-leucine = 4-methyl-2-oxopentanoat…
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```sql
SELECT sp3.*
FROM supplement_product sp1
INNER JOIN iherb_product ip1 ON ip1.id = sp1.iherb_product_id CROSS JOIN LATERAL unnest(
ip1.related_products) AS related_product_id
INNER JOIN i…
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From the series better late than never, this is a follow up to my previous ticket #1763 (part of the time it took me to respond was that by the time I was ready, new releases of Enzyme and LLVM came o…
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Enzyme test cases are missing.
Sagas for send message and recieve message.
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As part of the request "Better/more obvious integration of "validated" structure annotations from sandbox/glycotree" from the F2F, @edwardsnj will look into the validation logic in glycotree. Afterwar…
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Twist Bioscience has a GC variance constraint. Quote from their website:
> Avoid extreme differences in GC content within a gene (i.e. the difference in GC content between the highest and lowest 50…
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This si a spin of from #6 for the additions of general linear constraints of the form:
`C * v relation d`
Where `C` is a matrix with columns corresponding to model reactions and rows corresponding t…
tpfau updated
6 years ago