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### Description of feature
Hi,
Illumina has introduced a new read compression format, ORA: https://www.illumina.com/science/genomics-research/articles/design-ora-lossless-genomic-compression.htm…
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We have Galaxy instance running in our laboratory for more than 4 years. Recently, we ran out of disk space (100TB) and then we realised the FASTQ files occupied more than 60% of our disk space. I wou…
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Would you please provide the support compression format such as gzip, bz2 for input fastq files? @hellosunking
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Hi,
I stumbled across an issue when testing multiple versions of htslib/bgzip. With release of a blasting fast decompression algorithm in 2023 [https://github.com/mxmlnkn/rapidgzip](https://github.…
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The current implementation only support compression for different algorithms in HDFS, but in local or other `java.nio.Path` implementations it does only check for `GZIP` and `BZIP2`. In addition, this…
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Feature request to support zstandard compressed fastq e.g. `.fastq.zst`. Its compression performance is much better than gzip.
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Hello!
Mince crashes during decompression (uncaught exception). It happens occasionally during the compression, but it is not consistent behaviour — e.g. for SRR870667, specifying 4 threads causes cr…
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Dear CoLoRd developer. We used CoLoRd for FastQ Long Reads' no-reference compression experiment. In the dataset ERR11011595(https://www.ebi.ac.uk/ena/browser/view/ERR11011595) , run the following comm…
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Galaxy supports fastq.gz files. For anyone interested in very fast gzip compression I recommend checking out [ISA-L](https://github.com/intel/isa-l). Which comes with an `igzip` application that decom…
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Greetings,
I am the author of Genozip (www.genozip.com) - a software package for compressing FASTQ / BAM / VCF.
When compressing a fastq file, Genozip first inflates the gzip compression before…